1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGTTCATATTCATGCGCGTGATCTCAGAATCCTTGATCCCTTGCTCTCTTACCCCTCCACCATTCTCGGTCGTGAGAAGGCCATTGTTCTTAACTTGGAGgtattggtatattttttttccctattgttttttattttatttttgtttttttaattttgttttgcttcttctgattctgtgtttcag
species | Glycine max |
transcript | GLYMA20G35260.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCCTCCACCATTCTCGGTCGTGAAGAAGGCCATTGTTCTTAACTTGGAG CAATAAATTAAGGCAATTATCEST: gi|208199443|gb|GE001603.1|GE001603
genomic: CCCCTCCACCATTCTCGGTCGTGA-GAAGGCCATTGTTCTTAACTTGGAGgtattggtat ... tgtgtttcagCA-TA--TTAAGGCAATTATC
EST: ACCCCTCCACCATTCTCGGTCGTGAGAAGGCCATTGTTCTTAACTTGGAG CAATAATTAAGGCAATTATC
genomic: ACCCCTCCACCATTCTCGGTCGTGAGAAGGCCATTGTTCTTAACTTGGAGgtattggtat ... tgtgtttcagCA-TA-TTAAGGCAATTATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTCATATTCATGCGCGTGATCTCAGAATCCTTGATCCCTTGCTCTCTTACCCCTCCACCATTCTCGGTCGTGAGAAGGCCATTGTTCTTAACTTGGAGgtattggtatattttttttccctattgttttttattttatttttgtttttttaattttgttttgcttcttctgattctgtgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG