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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAACTGTTTGTCTATCTTTCTACTCTTTGGTGGCGGCTATATTTGGCATGAATATCCCATATACTTGGAACGAAAACCATGGTTACATGTTCAAATGGgtatgcaaactattactgtttatgcatgcacatgtgtgctcacatatatgttgctgcaaaattttggacttgatattatgaataaagaataaaaatactccatgttttcttgcag

Basic information

species Glycine max
transcript GLYMA20G35260.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35260.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv05s0020g04720.t01 (Vitis vinifera), 5'ss of exon 10
TGGAACTGTTTGTCTATCTTTCTACTCTTTGGTGGCGGCTATATTTGGCATGAATATCCCATATACTTGGAACGAAAACCATGGTTACATGTTCAAATGGgtatgcaaactattactgtttatgcatgcacatgtgtgctcacatatatgttgctgcaaaattttggacttgatattatgaataaagaataaaaatactccatgttttcttgcag
|||||| |||||| ||||  |||| ||||||||||| |  ||||||||||||||||| || ||||||||||| ||  | ||||| | |||||||||||||||||||||  |||| |   |  |  ||     ||||  ||    | |   | | |  |  |||  | ||         ||||| |          | |||  |   |  || |||
TGGAACAGTTTGTTTATCCATCTATTCTTTGGTGGCTGGAATATTTGGCATGAATATTCCCTATACTTGGAATGATGATCATGGGTTCATGTTCAAATGGgtatgcaa-ttatttcatctggtaaatttggttgtgaact----tttgaatggatatactattccgtaccct------tgaatga----------ttctcttttcctgttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335317|gb|CO979183.1|CO979183
EST:     TGAATATCCCATATACTTGGAACGAAAACCATGGTTACATGTTCAAATGG                         GTAGTTATTGTCTCGGGAGTATTTTCTGCTGTGATGTTTCTCATGATTACA
genomic: TGAATATCCCATATACTTGGAACGAAAACCATGGTTACATGTTCAAATGGgtatgcaaac ... tttcttgcagGTAGTTATTGTCTCGGGAGTATTTTCTGCTGTGATGTTTCTCATGATTACA
EST: gi|151407766|gb|EV277581.1|EV277581
EST:     TGAATATCCCATATACTTGGAACGAAAACCATGGTTACATGTTCAAATGG                         GTAGTTATTGTCTCGGGAGTATTTTCTGCTGTGATGTTTCTCATGATTACA
genomic: TGAATATCCCATATACTTGGAACGAAAACCATGGTTACATGTTCAAATGGgtatgcaaac ... tttcttgcagGTAGTTATTGTCTCGGGAGTATTTTCTGCTGTGATGTTTCTCATGATTACA
EST: gi|58023586|gb|CX710327.1|CX710327
EST:     TGATTATCCCATATACTTGGAACGAAAACCATGGTTACATGTTCAAATGG                         GTAGTTATTGTCTCGGGAGTATTTTCTGCTGTGATGTTTCTCATGATTACA
genomic: TGAATATCCCATATACTTGGAACGAAAACCATGGTTACATGTTCAAATGGgtatgcaaac ... tttcttgcagGTAGTTATTGTCTCGGGAGTATTTTCTGCTGTGATGTTTCTCATGATTACA