1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aggattgctttataatgaacaaaataacttccacatatatttcttcacagttcaatgttagttagctgatccatatttcttaccctaattattctaccagATCCGGTTTCACTTGTCCGTGATCACAACATCAAAGAAAAACTAGTGGAACAAGGCATATCAGTCCAAAGCTACAATGGAGATCTGTTGTATGAGCCATG
species | Glycine max |
transcript | GLYMA20G35220.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTAAAGGCCATTCAAGCAAACAAAAGTAGTGTTTAACCATCTGTATG ATCCGGTTTCACTTGTCCGTGATCACAACATCAAAAGAAAAAACTAGTGGAEST: gi|254328467|gb|GR835432.1|GR835432
genomic: CGTAAAGGCCATTCAAGC-AACAAAAGTAGTGTTTAACCATCTGTATGgtaagtgtag ... attctaccagATCCGGTTTCACTTGTCCGTGATCACAACATC-AAAG-AAAAACTAGTGGA
EST: GTGCGTAAAGGCCATTCAAGCAACAAAAGTAGTGTTTAACCATCTGTATG ATCCGGTTTCACTTGTCCGTGATCACAACATCAAAGAAAAACTAGTGGAACEST: gi|193405026|gb|FK373397.1|FK373397
genomic: GTGCGTAAAGGCCATTCAAGCAACAAAAGTAGTGTTTAACCATCTGTATGgtaagtgtag ... attctaccagATCCGGTTTCACTTGTCCGTGATCACAACATCAAAGAAAAACTAGTGGAAC
EST: GTGCGTAAAGGCCATTCAAGCAACAAAAGTAGTGTTTAACCATCTGTATG ATCCGGTTTCACTTGTCCGTGATCACAACATCAAAGAAAAACTAGTGGAACEST: gi|193360485|gb|FK328097.1|FK328097
genomic: GTGCGTAAAGGCCATTCAAGCAACAAAAGTAGTGTTTAACCATCTGTATGgtaagtgtag ... attctaccagATCCGGTTTCACTTGTCCGTGATCACAACATCAAAGAAAAACTAGTGGAAC
EST: ACAAAAGTAGTGTTTAACCTATTCTTGTTATG ATCCGGTTTCACTTGTCCGTGATCACAACATCAAAGAAAAACTAGTGGAA
genomic: ACAAAAGTAGTGTTTAACC-A-TC-TG-TATGgtaagtgtag ... attctaccagATCCGGTTTCACTTGTCCGTGATCACAACATCAAAGAAAAACTAGTGGAA
cacagttcaatgttagttagctgatccatatttcttaccctaattattctaccagATCCGGTTTCACTTGTCCGTGATCACAACATCAAAGAAAAACTAGTGGAACAAGGCATATCAGTCCAAAGCTACAATGGAGATCTGTTGTATGAGCCATG
ttattct CT-rich tract
taattattcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggattgctttataatgaacaaaataacttccacatatatttcttcacagttcaatgttagttagctgatccatatttcttaccctaattattctaccagATCCGGTTTCACTTGTCCGTGATCACAACATCAAAGAAAAACTAGTGGAACAAGGCATATCAGTCCAAAGCTACAATGGAGATCTGTTGTATGAGCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - -tgcttta
- - - - - - -aatgaac
- - - - - - - - - - aaaataa
- - - - - - - - - - - - - -cttccac
- - - - - - - - - - - - - - - - - - - - -tcttcac
- - - - - - - - - - - - - - - - - - - - - - - - - - caatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatcc