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...ttttttattttatgttgttgaatgattaaagaagagaataatttagagagttgcggtatatgaaacttaactactgaaacttttgttgattttatcacagATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGACTAGTCCTCCTCCTAGATTAGCTGACTTTGGCTATTCGAGTGACATGTT
species | Glycine max |
transcript | GLYMA20G35120.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCAATTTGNGGAGTAAATATGGAAGCATGCATAACACCTTACAGTGATC ATGACAACAGAGCCCAGGGTAGTGGATTAGCTTCATTGCCTGCAAGAATGAEST: gi|15337283|gb|BI497939.1|BI497939
genomic: TGCAATTTGGGGAGTAAATATGGAAGCATGCATAACACCTTACAGTGATCgtgagtaccc ... tttatcacagATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGA
EST: TGCAATTTGGGGAGTAAATATGGAAGCATGCATAACACCTTACAGTGATC ATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGAEST: gi|21678269|gb|BQ630620.1|BQ630620
genomic: TGCAATTTGGGGAGTAAATATGGAAGCATGCATAACACCTTACAGTGATCgtgagtaccc ... tttatcacagATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGA
EST: TGCAATTTGGGGAGTAAATATGGAAGCATGCATAACACCTTACAGTGATC ATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGA
genomic: TGCAATTTGGGGAGTAAATATGGAAGCATGCATAACACCTTACAGTGATCgtgagtaccc ... tttatcacagATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGA
gagagttgcggtatatgaaacttaactactgaaacttttgttgattttatcacagATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGACTAGTCCTCCTCCTAGATTAGCTGACTTTGGCTATTCGAGTGACATGTT
ttttatc CT-rich tract
ttttgttgattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttattttatgttgttgaatgattaaagaagagaataatttagagagttgcggtatatgaaacttaactactgaaacttttgttgattttatcacagATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGACTAGTCCTCCTCCTAGATTAGCTGACTTTGGCTATTCGAGTGACATGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA