1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ataagtgggcacaatcaagttcatgggcatcatctaaatatgactatacttttggctcatcagcagtctcatggtgtttgcaatgtttatgtttttgaagGTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTTATCTATCAAATGAGGATGAAGCTGGACCTGTCTGTGATGGAGCACTATG
species | Glycine max |
transcript | GLYMA20G35120.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTTCAGACAGGGAGATGGGGAGGATAATATTGTTCCTAAGAGTTTCCCT GTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTTEST: gi|19347566|gb|BM892446.1|BM892446
genomic: GTTTCAGACAGGGAGATGGGGAGGATAATATTGTTCCTAAGAGTTTCCCTgtatgttgct ... gtttttgaagGTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTT
EST: GTTTCAGACAGGGAGATGGGGAGGATAATATTGTTCCTAAGAGTTTCCCT GTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTTEST: gi|254314767|gb|GR829760.1|GR829760
genomic: GTTTCAGACAGGGAGATGGGGAGGATAATATTGTTCCTAAGAGTTTCCCTgtatgttgct ... gtttttgaagGTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTT
EST: GTTTCAGACAGGGAGATGGGGAGGATAATATTGTTCCTAAGAGTTTCCCT GTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTTEST: gi|207780958|gb|GD753607.1|GD753607
genomic: GTTTCAGACAGGGAGATGGGGAGGATAATATTGTTCCTAAGAGTTTCCCTgtatgttgct ... gtttttgaagGTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTT
EST: GTTTCAGACAGGGAGATGGGGAGGATAATATTGTTCCTAAGAGTTTCCCT GTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTTEST: gi|6566784|gb|AW234416.1|AW234416
genomic: GTTTCAGACAGGGAGATGGGGAGGATAATATTGTTCCTAAGAGTTTCCCTgtatgttgct ... gtttttgaagGTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTT
EST: GTTTCAGACAGGGAGATGGGGAGGATAATATTGTTCCTAAGAGTTTCCCT GTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTT
genomic: GTTTCAGACAGGGAGATGGGGAGGATAATATTGTTCCTAAGAGTTTCCCTgtatgttgct ... gtttttgaagGTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTT
atacttttggctcatcagcagtctcatggtgtttgcaatgtttatgtttttgaagGTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTTATCTATCAAATGAGGATGAAGCTGGACCTGTCTGTGATGGAGCACTATG
tgttttt CT-rich tract
aatgtttatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataagtgggcacaatcaagttcatgggcatcatctaaatatgactatacttttggctcatcagcagtctcatggtgtttgcaatgtttatgtttttgaagGTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTTATCTATCAAATGAGGATGAAGCTGGACCTGTCTGTGATGGAGCACTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA