1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTTGGGTGCAGAGGATGACACTGATGGCAAGCAAGATGAATCTTCATCAAGTTTCAGACAGGGAGATGGGGAGGATAATATTGTTCCTAAGAGTTTCCCTgtatgttgctttgttagcttagacatacggcatgttcactatttcttcatggtttcttgcaacatccttttaattgctataatctttaatatttcatttc...
species | Glycine max |
transcript | GLYMA20G35120.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTTTCAGACAGGGAGATGGGGAGGATAATATTGTTCCTAAGAGTTTCCCT GTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTTEST: gi|19347566|gb|BM892446.1|BM892446
genomic: GTTTCAGACAGGGAGATGGGGAGGATAATATTGTTCCTAAGAGTTTCCCTgtatgttgct ... gtttttgaagGTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTT
EST: GTTTCAGACAGGGAGATGGGGAGGATAATATTGTTCCTAAGAGTTTCCCT GTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTTEST: gi|254314767|gb|GR829760.1|GR829760
genomic: GTTTCAGACAGGGAGATGGGGAGGATAATATTGTTCCTAAGAGTTTCCCTgtatgttgct ... gtttttgaagGTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTT
EST: GTTTCAGACAGGGAGATGGGGAGGATAATATTGTTCCTAAGAGTTTCCCT GTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTTEST: gi|207780958|gb|GD753607.1|GD753607
genomic: GTTTCAGACAGGGAGATGGGGAGGATAATATTGTTCCTAAGAGTTTCCCTgtatgttgct ... gtttttgaagGTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTT
EST: GTTTCAGACAGGGAGATGGGGAGGATAATATTGTTCCTAAGAGTTTCCCT GTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTTEST: gi|6566784|gb|AW234416.1|AW234416
genomic: GTTTCAGACAGGGAGATGGGGAGGATAATATTGTTCCTAAGAGTTTCCCTgtatgttgct ... gtttttgaagGTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTT
EST: GTTTCAGACAGGGAGATGGGGAGGATAATATTGTTCCTAAGAGTTTCCCT GTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTT
genomic: GTTTCAGACAGGGAGATGGGGAGGATAATATTGTTCCTAAGAGTTTCCCTgtatgttgct ... gtttttgaagGTTTGTGATGATCGTCATTCAGAGTTGATTCCCTGCTTAGATAGACACCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGGGTGCAGAGGATGACACTGATGGCAAGCAAGATGAATCTTCATCAAGTTTCAGACAGGGAGATGGGGAGGATAATATTGTTCCTAAGAGTTTCCCTgtatgttgctttgttagcttagacatacggcatgttcactatttcttcatggtttcttgcaacatccttttaattgctataatctttaatatttcatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT