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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAATTCAACTACCTGTACAGTTTGGTACAAGTAGAGGTTGAAACTAAAACGGCTAAGTCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAGgtaaagaacaccaagcaactaccatttaacatgtaattcatactgttatggcattccaaaatttgttattttagagaactatttccttaatttgtaatgt...

Basic information

species Glycine max
transcript GLYMA20G34980.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34980.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0049g01330.t01 (Vitis vinifera), 5'ss of exon 4
CCAAATTCAACTACCTGTACAGTTTGGTACAAGTAGAGGTTGAAACTAAAACGGCTAAGTCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAGgtaaagaacaccaagcaactaccatttaacatgtaattcatactgttatggcattccaaaatttgt---tattttagagaactatttccttaatttgtaatgt-
|| ||||||||  | |||||||| ||||| |||| ||||||| | |||| || || ||   ||||||||||||||||||||| ||||| ||| | ||||||||   |  | ||     |||     |  |   |  ||  |       | |||||  | || |||    | ||||     ||| |||| ||  |||  ||  | 
CCGAATTCAACCTCTTGTACAGTATGGTAGAAGTCGAGGTTGCAGCTAAGACTGCAAAAGGATCATCCAGTTGTACCAATGGCCTTCTGTGGTTGACAAGgtatccactatca--ttgctatgtgcttgccctttctttgtg--aaccttgcattttagaaattggaaatgtttttctttactgtttcgtttgtttagaaaatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9898873|gb|BE607841.1|BE607841
EST:     ACGGCTAAGTCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAG                         AGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGA
genomic: ACGGCTAAGTCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAGgtaaagaaca ... aaattttcagAGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGA
EST: gi|58015415|gb|CX702157.1|CX702157
EST:     ACGGCTAAGTCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAG                         AGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGA
genomic: ACGGCTAAGTCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAGgtaaagaaca ... aaattttcagAGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGA
EST: gi|6228232|gb|AW156831.1|AW156831
EST:     CTTCTTTGGCTTACAAG                         AGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGA
genomic: CTTCTTTGGCTTACAAGgtaaagaaca ... aaattttcagAGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGA
EST: gi|192304253|gb|FG993537.1|FG993537
EST:     ACGGCTAAGTCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAG                         AGCAATGGATTTCTTAGTGGCATTATTCCAAAACCTAATTGAGCATGCAGA
genomic: ACGGCTAAGTCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAGgtaaagaaca ... aaattttcagAGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGA
EST: gi|58015688|gb|CX702430.1|CX702430
EST:     ACGGCTAAGTCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAG                         AGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGA
genomic: ACGGCTAAGTCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAGgtaaagaaca ... aaattttcagAGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGA
EST: gi|9984695|gb|BE658803.1|BE658803
EST:     CTTCNTTGGCTTACAAG                         AGCAATGGATTTNTTAGTGNNATTATTCCAAAACTTAATTGAGCATGCAGA
genomic: CTTCTTTGGCTTACAAGgtaaagaaca ... aaattttcagAGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGA
EST: gi|151400774|gb|EV270588.1|EV270588
EST:     ACGGCTAAGTCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAG                         AGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGA
genomic: ACGGCTAAGTCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAGgtaaagaaca ... aaattttcagAGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGA
EST: gi|192304254|gb|FG993538.1|FG993538
EST:     TCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAG                         AGCAATGGATTTCTTAGTGGCATTATTCCAAAACCTAATTGAGCATGCAGA
genomic: TCATCATCCAGTTGTACCAATGGACTTCTTTGGCTTACAAGgtaaagaaca ... aaattttcagAGCAATGGATTTCTTAGTGGCATTATTCCAAAACTTAATTGAGCATGCAGA