1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACAAGTTTGGAGCTGCTATGGCCCTTGTTAAATCTGACATCGGTGGTAACATATCGgtaggtttttgtcacccaattctatcgtatgtgctcctatttttttggtacatatgggtcataatatgcatgcttgcagctttatatgcaatactactaa...
species | Glycine max |
transcript | GLYMA20G34980.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGGAGCTGCTATGGCCCTTGTTAAATCTGACATCGGTGGTAACATATCG AGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTACEST: gi|58015415|gb|CX702157.1|CX702157
genomic: TTGGAGCTGCTATGGCCCTTGTTAAATCTGACATCGGTGGTAACATATCGgtaggttttt ... ttcaaagcagAGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTAC
EST: TTGGAGCTGCTATGGCCCTTGTTAAATCTGACATCGGTGGTAACATATCG AGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTACEST: gi|192304253|gb|FG993537.1|FG993537
genomic: TTGGAGCTGCTATGGCCCTTGTTAAATCTGACATCGGTGGTAACATATCGgtaggttttt ... ttcaaagcagAGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTAC
EST: TTGGAGCTGCTATGGCCCTTGTTAAATCTGACATCGGTGGTAACGTATCG AGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTACEST: gi|58015688|gb|CX702430.1|CX702430
genomic: TTGGAGCTGCTATGGCCCTTGTTAAATCTGACATCGGTGGTAACATATCGgtaggttttt ... ttcaaagcagAGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTAC
EST: TTGGAGCTGCTATGGCCCTTGTTAAATCTGACATCGGTGGTAACATATCG AGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTACEST: gi|151400774|gb|EV270588.1|EV270588
genomic: TTGGAGCTGCTATGGCCCTTGTTAAATCTGACATCGGTGGTAACATATCGgtaggttttt ... ttcaaagcagAGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTAC
EST: TTGGAGCTGCTATGGCCCTTGTTAAATCTGACATCGGTGGTAACATATCG AGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTAC
genomic: TTGGAGCTGCTATGGCCCTTGTTAAATCTGACATCGGTGGTAACATATCGgtaggttttt ... ttcaaagcagAGATTGGAATCTAAGTATTCCTCCAATCCAACCAAATTCAACTACCTGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAGTTTGGAGCTGCTATGGCCCTTGTTAAATCTGACATCGGTGGTAACATATCGgtaggtttttgtcacccaattctatcgtatgtgctcctatttttttggtacatatgggtcataatatgcatgcttgcagctttatatgcaatactactaa
- - - TTGGAG
- - - - GGAGCT
- - - - - AGCTGC
- - - - - GCTGCT