Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAAATTGTCGGAACAACAAAAAGCTTCTGGGTCGTGTAAGGGCTTTTGACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAGgtatggtttgtcttttagaattttacttcccttgcacttgttacatcttctaagctatctgtgtgtacaatcag

Basic information

species Glycine max
transcript GLYMA20G34630.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10256066|gb|BE823832.1|BE823832
EST:     ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAG                         GTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
genomic: ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAGgtatggtttg ... gtacaatcagGTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
EST: gi|38193466|gb|CF922672.1|CF922672
EST:     ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAG                         GTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
genomic: ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAGgtatggtttg ... gtacaatcagGTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
EST: gi|192329387|gb|FK022163.1|FK022163
EST:     ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAG                         GTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
genomic: ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAGgtatggtttg ... gtacaatcagGTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
EST: gi|6666781|gb|AW278240.1|AW278240
EST:     ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAG                         GTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
genomic: ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAGgtatggtttg ... gtacaatcagGTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
EST: gi|7795563|gb|AW780960.1|AW780960
EST:     ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAG                         GTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
genomic: ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAGgtatggtttg ... gtacaatcagGTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
EST: gi|298185211|gb|HO030424.1|HO030424
EST:     ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAG                         GTGCCGAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
genomic: ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAGgtatggtttg ... gtacaatcagGTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
EST: gi|6072473|gb|AW101860.1|AW101860
EST:     ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAG                         GTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
genomic: ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAGgtatggtttg ... gtacaatcagGTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
EST: gi|6719922|gb|AW307569.1|AW307569
EST:     ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAG                         GTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
genomic: ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAGgtatggtttg ... gtacaatcagGTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
EST: gi|27424466|gb|CA935986.1|CA935986
EST:     ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAG                         GTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
genomic: ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAGgtatggtttg ... gtacaatcagGTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
EST: gi|12689982|gb|BG156318.1|BG156318
EST:     ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAG                         GTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
genomic: ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAGgtatggtttg ... gtacaatcagGTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
EST: gi|208202139|gb|GD997090.1|GD997090
EST:     ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAG                         GTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
genomic: ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAGgtatggtttg ... gtacaatcagGTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
EST: gi|15200676|gb|BI424472.1|BI424472
EST:     ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAG                         GTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
genomic: ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAGgtatggtttg ... gtacaatcagGTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
EST: gi|151411472|gb|EV281283.1|EV281283
EST:     ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAG                         GTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
genomic: ACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAGgtatggtttg ... gtacaatcagGTGCCAAAGACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGAT
EST: gi|207684636|gb|GD665225.1|GD665225
EST:     TGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAG                         GTGCCAAAGACT
genomic: TGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAGgtatggtttg ... gtacaatcagGTGCCAAAGACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATAAATTGTCGGAACAACAAAAAGCTTCTGGGTCGTGTAAGGGCTTTTGACAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAGgtatggtttgtcttttagaattttacttcccttgcacttgttacatcttctaagctatctgtgtgtacaatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG