Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAGgtattgattctgtaactcttctccttgtgaattctattggtattgttgatattattattaaattttcaccttttttttcctgaagtactaatatttctgttttgtttccctactttcttttctcaag

Basic information

species Glycine max
transcript GLYMA20G34630.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10256066|gb|BE823832.1|BE823832
EST:     TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAG                         CCGGCCAATGGAGGAAGAT
genomic: TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAGgtattgattc ... ttttctcaagCCGGCCAATGGAGGAAGAT
EST: gi|38193466|gb|CF922672.1|CF922672
EST:     TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAG                         CCGGCCAATGGAGGAAGAT
genomic: TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAGgtattgattc ... ttttctcaagCCGGCCAATGGAGGAAGAT
EST: gi|193716579|gb|FK653241.1|FK653241
EST:     TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAG                         CCGGCCAATGGAGGAAGAT
genomic: TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAGgtattgattc ... ttttctcaagCCGGCCAATGGAGGAAGAT
EST: gi|192329387|gb|FK022163.1|FK022163
EST:     TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAG                         CCGGCCAATGGAGGAAGAT
genomic: TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAGgtattgattc ... ttttctcaagCCGGCCAATGGAGGAAGAT
EST: gi|6666781|gb|AW278240.1|AW278240
EST:     TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAG                         CCGGCCAATGGAGGAAGAT
genomic: TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAGgtattgattc ... ttttctcaagCCGGCCAATGGAGGAAGAT
EST: gi|7795563|gb|AW780960.1|AW780960
EST:     TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAG                         CCGGCCAATGGAGGAAGAT
genomic: TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAGgtattgattc ... ttttctcaagCCGGCCAATGGAGGAAGAT
EST: gi|298185211|gb|HO030424.1|HO030424
EST:     TTCGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAG                         CCGGCCAATGGAGGAAGAT
genomic: TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAGgtattgattc ... ttttctcaagCCGGCCAATGGAGGAAGAT
EST: gi|6072473|gb|AW101860.1|AW101860
EST:     TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAG                         CCGGCCAATGGAGGAAGAT
genomic: TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAGgtattgattc ... ttttctcaagCCGGCCAATGGAGGAAGAT
EST: gi|6719922|gb|AW307569.1|AW307569
EST:     TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAG                         CCGGCCAATGGAGGAAGAT
genomic: TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAGgtattgattc ... ttttctcaagCCGGCCAATGGAGGAAGAT
EST: gi|207716872|gb|GD698570.1|GD698570
EST:     TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAG                         CCGGCCAATGGAGGAAGAT
genomic: TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAGgtattgattc ... ttttctcaagCCGGCCAATGGAGGAAGAT
EST: gi|27424466|gb|CA935986.1|CA935986
EST:     TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAG                         CCGGCCAATGGAGGAAGAT
genomic: TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAGgtattgattc ... ttttctcaagCCGGCCAATGGAGGAAGAT
EST: gi|12689982|gb|BG156318.1|BG156318
EST:     TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAG                         CCGGCCAATGGAGGAAGAT
genomic: TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAGgtattgattc ... ttttctcaagCCGGCCAATGGAGGAAGAT
EST: gi|193560408|gb|FK519729.1|FK519729
EST:     TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAG                         CCGGCCAATGGAGGAAGAT
genomic: TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAGgtattgattc ... ttttctcaagCCGGCCAATGGAGGAAGAT
EST: gi|208337439|gb|GE133463.1|GE133463
EST:     TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAG                         CCGGCCGATGGTAGGAAGAT
genomic: TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAGgtattgattc ... ttttctcaagCCGGCCAATGG-AGGAAGAT
EST: gi|15200676|gb|BI424472.1|BI424472
EST:     TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAG                         CCGGCCAATGGAGGAAGAT
genomic: TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAGgtattgattc ... ttttctcaagCCGGCCAATGGAGGAAGAT
EST: gi|15200738|gb|BI424505.1|BI424505
EST:     TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAG                         CCGGCCAATGGAGGAAGAT
genomic: TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAGgtattgattc ... ttttctcaagCCGGCCAATGGAGGAAGAT
EST: gi|208214400|gb|GE012829.1|GE012829
EST:     TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAG                         CCGGCCAATGGAGGAAGAT
genomic: TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAGgtattgattc ... ttttctcaagCCGGCCAATGGAGGAAGAT
EST: gi|151411472|gb|EV281283.1|EV281283
EST:     TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAG                         CCGGCCAATGGAGGAAGAT
genomic: TTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAGgtattgattc ... ttttctcaagCCGGCCAATGGAGGAAGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTTGACTTTATTTGAAGAGTTTCTCAACTGCACTTTCCTTCCAAAATGAGgtattgattctgtaactcttctccttgtgaattctattggtattgttgatattattattaaattttcaccttttttttcctgaagtactaatatttctgttttgtttccctactttcttttctcaag

- - - - - - TTGAAG
- - - - - -  TGAAGA