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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGCCAATGGAGGAAGATgtaagttctgttaagtacatttttattttgcataatttagcccaatttttgcttgtcattgctcatatgtaaccactaaacaggctacctaggcaaaggg...

Basic information

species Glycine max
transcript GLYMA20G34630.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10256066|gb|BE823832.1|BE823832
EST:     AATGAGCCGGCCAATGGAGGAAGAT                         GCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
genomic: AATGAGCCGGCCAATGGAGGAAGATgtaagttctg ... ctttttacagGCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
EST: gi|38193466|gb|CF922672.1|CF922672
EST:     AATGAGCCGGCCAATGGAGGAAGAT                         GCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
genomic: AATGAGCCGGCCAATGGAGGAAGATgtaagttctg ... ctttttacagGCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
EST: gi|193716579|gb|FK653241.1|FK653241
EST:     AATGAGCCGGCCAATGGAGGAAGAT                         GCTGCGGGTAAAAATGAGGAAGGGGAGTTCAACACCGGACCACTATCTGTA
genomic: AATGAGCCGGCCAATGGAGGAAGATgtaagttctg ... ctttttacagGCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
EST: gi|192329387|gb|FK022163.1|FK022163
EST:     AATGAGCCGGCCAATGGAGGAAGAT                         GCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
genomic: AATGAGCCGGCCAATGGAGGAAGATgtaagttctg ... ctttttacagGCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
EST: gi|6666781|gb|AW278240.1|AW278240
EST:     AATGAGCCGGCCAATGGAGGAAGAT                         GCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
genomic: AATGAGCCGGCCAATGGAGGAAGATgtaagttctg ... ctttttacagGCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
EST: gi|7795563|gb|AW780960.1|AW780960
EST:     AATGAGCCGGCCAATGGAGGAAGAT                         GCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
genomic: AATGAGCCGGCCAATGGAGGAAGATgtaagttctg ... ctttttacagGCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
EST: gi|298185211|gb|HO030424.1|HO030424
EST:     AATGAGCCGGCCAATGGAGGAAGAT                         GCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
genomic: AATGAGCCGGCCAATGGAGGAAGATgtaagttctg ... ctttttacagGCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
EST: gi|6072473|gb|AW101860.1|AW101860
EST:     AATGAGCCGGCCAATGGAGGAAGAT                         GCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
genomic: AATGAGCCGGCCAATGGAGGAAGATgtaagttctg ... ctttttacagGCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
EST: gi|6719922|gb|AW307569.1|AW307569
EST:     AATGAGCCGGCCAATGGAGGAAGAT                         GCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
genomic: AATGAGCCGGCCAATGGAGGAAGATgtaagttctg ... ctttttacagGCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
EST: gi|207716872|gb|GD698570.1|GD698570
EST:     AATGAGCCGGCCAATGGAGGAAGAT                         GCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
genomic: AATGAGCCGGCCAATGGAGGAAGATgtaagttctg ... ctttttacagGCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
EST: gi|27424466|gb|CA935986.1|CA935986
EST:     AATGAGCCGGCCAATGGAGGAAGAT                         GCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
genomic: AATGAGCCGGCCAATGGAGGAAGATgtaagttctg ... ctttttacagGCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
EST: gi|12689982|gb|BG156318.1|BG156318
EST:     AATGAGCCGGCCAATGGAGGAAGAT                         GCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
genomic: AATGAGCCGGCCAATGGAGGAAGATgtaagttctg ... ctttttacagGCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
EST: gi|193560408|gb|FK519729.1|FK519729
EST:     AATGAGCCGGCCAATGGAGGAAGAT                         GCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
genomic: AATGAGCCGGCCAATGGAGGAAGATgtaagttctg ... ctttttacagGCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
EST: gi|208337439|gb|GE133463.1|GE133463
EST:     ATGAGCCGGCCGATGGTAGGAAGAT                         GCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGT
genomic: ATGAGCCGGCCAATGG-AGGAAGATgtaagttctg ... ctttttacagGCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGT
EST: gi|15200676|gb|BI424472.1|BI424472
EST:     AATGAGCCGGCCAATGGAGGAAGAT                         GCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
genomic: AATGAGCCGGCCAATGGAGGAAGATgtaagttctg ... ctttttacagGCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
EST: gi|15200738|gb|BI424505.1|BI424505
EST:     AATGAGCCGGCCAATGGAGGAAGAT                         GCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
genomic: AATGAGCCGGCCAATGGAGGAAGATgtaagttctg ... ctttttacagGCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
EST: gi|208214400|gb|GE012829.1|GE012829
EST:     AATGAGCCGGCCAATGGAGGAAGAT                         GCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
genomic: AATGAGCCGGCCAATGGAGGAAGATgtaagttctg ... ctttttacagGCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
EST: gi|151411472|gb|EV281283.1|EV281283
EST:     AATGAGCCGGCCAATGGAGGAAGAT                         GCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
genomic: AATGAGCCGGCCAATGGAGGAAGATgtaagttctg ... ctttttacagGCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGGCCAATGGAGGAAGATgtaagttctgttaagtacatttttattttgcataatttagcccaatttttgcttgtcattgctcatatgtaaccactaaacaggctacctaggcaaaggg

- - - - TGGAGG
- - - -  GGAGGA
- - - - - - GGAAGA