1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgatattccattctgagtaatactcaaacatacattttacccttgtccgaactacgtctgtttcaaactttatgatttgttaaatcgcaaaatgtaatgctatgttaattggtagatgcttcactgacagAGACTGTCATCTTTGAATTCTATTTGGCCATAAGCCAAAATAGTAAGGCCAAAGATGACAGGTTCGAGGACTGCACAAAGGCTTTTATACAAGGGTTGTT
species | Glycine max |
transcript | GLYMA20G34000.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: A-TTACAACATAGAACGGTGCATGCATTTTTAACCTTCAAAATGAATGAG AGACTGTCATCTTTGAATTCTATTTGEST: gi|209711424|gb|BW665176.1|BW665176
genomic: AATTACAACATAGAACGGTGCATGCATTTTTAACCTTCAAAATGAATGAGgtgatattcc ... tcactgacagAGACTGTCATCTTTGAATTCTATTTG
EST: AATTACAACATAGAACGGTGCATGCATTTTTAACCTTCAAAATGAATGAG AGACTGTCATCTTTGAATTCTATTTGGCCATAAGCCAAAATAGTAAGGCCA
genomic: AATTACAACATAGAACGGTGCATGCATTTTTAACCTTCAAAATGAATGAGgtgatattcc ... tcactgacagAGACTGTCATCTTTGAATTCTATTTGGCCATAAGCCAAAATAGTAAGGCCA
tttgttaaatcgcaaaatgtaatgctatgttaattggtagatgcttcactgacagAGACTGTCATCTTTGAATTCTATTTGGCCATAAGCCAAAATAGTAAGGCCAAAGATGACAGGTTCGAGGACTGCACAAAGGCTTTTATACAAGGGTTGTT
tgttaat putative branch site (score: 3)
cttcact putative PPT
aaaatgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatattccattctgagtaatactcaaacatacattttacccttgtccgaactacgtctgtttcaaactttatgatttgttaaatcgcaaaatgtaatgctatgttaattggtagatgcttcactgacagAGACTGTCATCTTTGAATTCTATTTGGCCATAAGCCAAAATAGTAAGGCCAAAGATGACAGGTTCGAGGACTGCACAAAGGCTTTTATACAAGGGTTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG