1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttagtattgttctgcataatatatgatttttgatgtgaagagaggaaaatttgtcttggattaattttcattttatatgatgtacatgctatgcctggacatttttgtttttgtgattctgatggttgtgtgattatttgtttaaaagGCTGCATTAGGTGCTCCTGAGGATGGTATCATGACAGCTGAACTTCTTGAAAGGTTGTATTTGGAGATAAGGAATAAGGACACCGGCAGTGCGACTCAAG
species | Glycine max |
transcript | GLYMA20G34000.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTATTCCAGCTTCTCAAGTGGAACCGAGCGTGCTGTGAAGACTTGGCAA GCTGCATTAGGTGCTCCTGAGGATGGTATCATGACAGCTGAACTTCTTGAAEST: gi|209714158|gb|BW679487.1|BW679487
genomic: AGTATTCCAGCTTCTCAAGTGGAACCGAGCGTGCTGTGAAGACTTGGCAAgttagtattg ... tgtttaaaagGCTGCATTAGGTGCTCCTGAGGATGGTATCATGACAGCTGAACTTCTTGAA
EST: AGTATTCCAGCTTCTCAAGTGGAACCGAGCGTGCTGTGAAGACTTGGCAA GCTGCATTAGGTGCTCCTGAGGATGGTATCATGACAGCTGAACTTCTTGAA
genomic: AGTATTCCAGCTTCTCAAGTGGAACCGAGCGTGCTGTGAAGACTTGGCAAgttagtattg ... tgtttaaaagGCTGCATTAGGTGCTCCTGAGGATGGTATCATGACAGCTGAACTTCTTGAA
cctggacatttttgtttttgtgattctgatggttgtgtgattatttgtttaaaagGCTGCATTAGGTGCTCCTGAGGATGGTATCATGACAGCTGAACTTCTTGAAAGGTTGTATTTGGAGATAAGGAATAAGGACACCGGCAGTGCGACTCAAG
ttctgat putative branch site (score: 3)
tttgttt putative PPT
tgattatttgtttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtattgttctgcataatatatgatttttgatgtgaagagaggaaaatttgtcttggattaattttcattttatatgatgtacatgctatgcctggacatttttgtttttgtgattctgatggttgtgtgattatttgtttaaaagGCTGCATTAGGTGCTCCTGAGGATGGTATCATGACAGCTGAACTTCTTGAAAGGTTGTATTTGGAGATAAGGAATAAGGACACCGGCAGTGCGACTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA