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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgacatacatttctagttcatcgtttcatactcaggcatgtaattatcagtatcattgcatcacaaaattttgtatagtatgctatttaatcatcaaaactgggaaataggaacttaatatttgagagatttttaactttcaaggctttggagcttacagagctacgtgaaaatctgcagAGAAACCTCAAATTACAACATAGAACGGTGCATGCATTTTTAACCTTCAAAATGAATGAG

Basic information

species Glycine max
transcript GLYMA20G34000.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209711423|gb|BW665175.1|BW665175
EST:     GCCTAGGGTATACTGTATGTGATCTATGTGGAGGGAAAACAATGGTATAG                         AGAAACCTCAA-TTACAACATAGAACGGTGCATGCATTTTTAACCTTCAAA
genomic: GCCTAGGGTATACTGTATGTGATCTATGTGGAGGGAAAACAATGGTATAGgtatgacata ... aaatctgcagAGAAACCTCAAATTACAACATAGAACGGTGCATGCATTTTTAACCTTCAAA
EST: gi|209711424|gb|BW665176.1|BW665176
EST:     GCCTAGGGTATACTGTATGTGATCTATGTGGAGGGAAAACAATGGTATAG                         AGAAACCTCAAATTACAACATAGAACGGTGCATGCATTTTTAACCTTCAAA
genomic: GCCTAGGGTATACTGTATGTGATCTATGTGGAGGGAAAACAATGGTATAGgtatgacata ... aaatctgcagAGAAACCTCAAATTACAACATAGAACGGTGCATGCATTTTTAACCTTCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagatttttaactttcaaggctttggagcttacagagctacgtgaaaatctgcagAGAAACCTCAAATTACAACATAGAACGGTGCATGCATTTTTAACCTTCAAAATGAATGAG
     ttttaacttt  TA-rich tract