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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACCAATTTAGATGGGAAATCAAAGCAGTATAAAGACCTTGCGTTGACACATCTTTTTCTCATGAACAATATTCATTATATTGTCAGATCGGTTCGGAGgtatgtcttcatgttttggttattattttctttgaatcatagttttattgtatattttggtggttcaaagtcagttttcctcctcacttaaaaaagttacttttcctcctaatcctcttttatcttag

Basic information

species Glycine max
transcript GLYMA20G33590.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33590.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os12g06270.1 (Oryza sativa), 5'ss of exon 8
AAACCAATTTAGATGGGAAATCAAAGCAGTATAAAGACCTTGCGTTGACACATCTTTTTCTCATGAACAATATTCATTATATTGTCAGATCGGTTCGGAGgtatgtct----tcatgttttggttattattttctttgaatcatagttttattgtatattttggtgg-ttcaaagtcagttttcctcctcacttaaaaaagttacttttcctcctaatcctcttttatcttag
| |  || |||||||||||||| ||||||||||| || | ||| |||||  || | ||||| |||||||| ||||| ||||| || ||||| || || ||||||||      | ||||||  | | || ||||| | ||| ||    | |    ||     |  ||  |||| | | || | ||    |    ||  | |                                 
AGAATAACTTAGATGGGAAATCTAAGCAGTATAAGGATCCTGCATTGACCTATATATTTCTTATGAACAACATTCACTATATGGTTAGATCTGTCCGCAGgtatgttccttgttatgtttcaggtgttgttttcctggaagcaagcctgttcaatactccctcatgtcttcatacttagatgtcggtttagtatattaca---------------------------------

upper sequence: GLYMA20G33590.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os11g05880.1 (Oryza sativa), 5'ss of exon 8
AAACCAATTTAGATGGGAAATCAAAGCAGTATAAAGACCTTGCGTTGACACATCTTTTTCTCATGAACAATATTCATTATATTGTCAGATCGGTTCGGAGgtatgtcttcatgttttggttattattttctttgaatcatagttttattgtatattttggtggttcaaagtcagttttcctcctcacttaaaaaagttacttttcctcctaatcctcttttatcttag
|||  || || ||||| ||||| || ||||| |  || | ||| |||||  |  | ||||| ||||| || ||||||||||| |||||||| ||||| |||||||| | | |  | |  ||         | || ||| ||    || ||   | | || |  || || ||    ||   |  |  || |                                      
AAAATAACTTGGATGGAAAATCTAAACAGTACAGGGATCCTGCATTGACCTACTTATTTCTGATGAATAACATTCATTATATGGTCAGATCTGTTCGTAGgtatgtttgcctcctctctttgaa------tctgcatcctataaatactg-gcaatatgctcatttaatgttg--ttctgtgtttcctcag-------------------------------------

upper sequence: GLYMA20G33590.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv13s0073g00170.t01 (Vitis vinifera), 5'ss of exon 8
AAACCAATTTAGATGGGAAATCAAAGCAGTATAAAGACCTTGCGTTGACACATCTTTTTCTCATGAACAATATTCATTATATTGTCAGATCGGTTCGGAGgtatgtcttcatgttttggttatt----attttctttgaa----tcatagttttattgtatattttggtggttcaaagtcagttttcctcctcacttaaaaaagttacttttcctcctaatcctcttttatcttag
|||||||||| ||||||||||| |||||||||||||| | ||| ||||| ||  | ||||| |||||||||||||| || || ||| |||| || || |||| ||| |  |   ||  ||  ||    | || ||||  |    | |||  ||| |  |  ||   | |   | | |||   |||      |   ||  |                                    
AAACCAATTTGGATGGGAAATCTAAGCAGTATAAAGATCCTGCTTTGACTCACTTATTTCTTATGAACAATATTCACTACATGGTCCGATCTGTGCGTAGgtttgtttctagacttctgtacttccaaacttccttttgaaatgttataagtttgtcttccatgcagatcactgatagtgcttttgatgtgttgttttcag-----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298193156|gb|HO033590.1|HO033590
EST:     CATCTTTTTCTCATGAACAATATTCATTATATTGTCAGATCGGTTCGGAG                         GTCTGAAGCCAAGGATTTGCTGGGGGATGATTGGGTACAACGACATAGGAG
genomic: CATCTTTTTCTCATGAACAATATTCATTATATTGTCAGATCGGTTCGGAGgtatgtcttc ... tttatcttagGTCTGAAGCCAAGGATTTGCTGGGGGATGATTGGGTACAACGACATAGGAG
EST: gi|17023421|gb|BM094455.1|BM094455
EST:     CATCTTTTTCTCATGAACAATATTCATTATATTGTCAGATCGGTTCGGAG                         GTCTGAAGCCAAGGATTTGCTGGGGGATGATTGGGTACAACGACATAGGAG
genomic: CATCTTTTTCTCATGAACAATATTCATTATATTGTCAGATCGGTTCGGAGgtatgtcttc ... tttatcttagGTCTGAAGCCAAGGATTTGCTGGGGGATGATTGGGTACAACGACATAGGAG