Sequence
atgc intronic sequence ATGC exonic sequenceCGCAATGGACAGTTCCAGACTCCGAGTTGCGAGAATCTCTTAGGCTAGCAGTTGCTGAAGTCTTGTTGCCTGCCTATAGATCGTTTGTCAAACGATTTGGgtttgttctcatttttattcacttcaaacgttattatgtcatttaggggattattatctatggatgtgaaataatgtgtttgtcccctttgtgacaaaaa...
Basic information
species | Glycine max |
transcript | GLYMA20G33590.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G33590.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G03540.1 (Arabidopsis thaliana), 5'ss of exon 11
CGCAATGGACAGTTCCAGACTCCGAGTTGCGAGAATCTCTTAGGCTAGCAGTTGCTGAAGTCTTGTTGCCTGCCTATAGATCGTTTGTCAAACGATTTGGgtttg---ttctcatttttattcacttcaaacgttattatgtcatttaggggattattatctatggatgtgaaataatgtgtttgtcccctttgtgacaaaaa
|||||||||||||||||||| | ||||| |||| || || || || || ||||||||||| || |||||||| |||||||| || ||||||| ||||||| || | | | || ||| | || | | || | |||| |||| || || | || | ||| || | || |
CGCAATGGACAGTTCCAGACACAGAGTTAAGAGAGTCACTAAGACTTGCTGTTGCTGAAGTATTATTGCCTGCTTATAGATCATTCCTCAAACGCTTTGGgtaaaaatctcctttctctctttactgcgaaggcttttctaatattt----gattgaaatgtaaaaaaacctaaatgagattttaacctatgatcgatgcag-
upper sequence: GLYMA20G33590.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv13s0073g00170.t01 (Vitis vinifera), 5'ss of exon 11
CGCAATGGACAGTTCCAGACTCCGAGTTGCGAGAATCTCTTAGGCTAGCAGTTGCTGAAGTCTTGTTGCCTGCCTATAGATCGTTTGTCAAACGATTTGGgtttgttctc-----atttttattcacttcaaacgttattatgtcatttaggggat-tattatctatggatgtgaaataatgtgtttgtcccctttgtgacaaaaa
| || ||||||||||| ||| | ||| ||||||| ||||| ||||| |||||||||||||| ||||| || || || ||| || | ||||| |||||||||||| || ||| | | || | || || | | | | ||||| | || || | |||| | || | ||| | |||| |
CTCAGTGGACAGTTCCTGACACTGAGCTGCGAGAGTCTCTGAGGCTTGCAGTTGCTGAAGTGTTGTTACCAGCGTACAGAAATTTCATTAAACGTTTTGGgtttgttttctcataattcacaacctttttatttatttttttattttggaagggatgtgagattta-gaatgttttcttttggctctgtagcatttgaaag-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209723746|gb|BW665669.1|BW665669EST: GTTGCTGAAGTCTTGTTGCCTGCCTATAGATCATTTGTCAAACGATTTGG GCCTCTAGTGGAGAGTGGAAAGAATCCTCAGAAGTACATCAAATACTCAGC
genomic: GTTGCTGAAGTCTTGTTGCCTGCCTATAGATCGTTTGTCAAACGATTTGGgtttgttctc ... tgtgttacagGCCTCTAGTGGAGAGTGGAAAGAATCCTCAGAAGTACATCAAATACTCAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGCAATGGACAGTTCCAGACTCCGAGTTGCGAGAATCTCTTAGGCTAGCAGTTGCTGAAGTCTTGTTGCCTGCCTATAGATCGTTTGTCAAACGATTTGGgtttgttctcatttttattcacttcaaacgttattatgtcatttaggggattattatctatggatgtgaaataatgtgtttgtcccctttgtgacaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccttt