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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgattgtaggattggtgctgtgttttttttttgtcttcattattcttttaatatctttcaaatatgtaattatacatgaacagGTGAAATTGTTGTTTGCTGGTGAGAGGAAAGTTTGTGATCAGATATTTGAAGGCTTTGATTCACTCAGTGAACAGTGCTTTGCGGAGGTGACTACAAACA

Basic information

species Glycine max
transcript GLYMA20G33590.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33590.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0073g00170.t01 (Vitis vinifera), 3'ss of exon 5
gtaagatgat-tgtaggattggtgct-------gtgttttttttttgtcttcattattcttttaata-tctttcaaatatgtaattatacatgaacagGTGAAATTGTTGTTTGCTGGTGAGAGGAAAGTTTGTGATCAGATATTTGAAGGCTTTGATTCACTCAGTGAACAGTGCTTTGCGGAGGTGACTACAAACA
||||||  || |||   ||| | |         |||| ||   ||||  | ||||  | | |   |  |||| ||| | ||| ||| ||||| ||||||| ||| | ||||||||||| ||  | |||||||||||||| |||||| |||||||||||||||||||||| ||||| ||||| || || ||| |||  |
gtaagaatatatgtcaaatttgcgggaatttaggtgtattaaatttgcatgcatttatgtatatctgctcttccaattctgttattttacataaacagGTTAAACTATTGTTTGCTGGGGAACGAAAAGTTTGTGATCAAATATTTCAAGGCTTTGATTCACTCAGTGATCAGTGTTTTGCTGAAGTTACTGCAAGTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtcttcattattcttttaatatctttcaaatatgtaattatacatgaacagGTGAAATTGTTGTTTGCTGGTGAGAGGAAAGTTTGTGATCAGATATTTGAAGGCTTTGATTCACTCAGTGAACAGTGCTTTGCGGAGGTGACTACAAACA
                 ttttaat  putative branch site (score: 3)
       ttcattattcttttaa  TA-rich tract