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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAGAACTCACTCTATTAGGAAGGCTCATGAGAATATTGATAGGACTTCGAAGGTTGCGGAGGTTATATTGGCTCACTTCGATCAATATCGTCAGgttggttttgtgttggtcctaccgtgatccgtttctcataatgtagctttttttttttaattattcaaatgaagttgctctttgttgaattgataaattg...

Basic information

species Glycine max
transcript GLYMA20G33590.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33590.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G03540.1 (Arabidopsis thaliana), 5'ss of exon 2
ATTAGAACTCACTCTATTAGGAAGGCTCATGAGAATATTGATAGGACTTCGAAGGTTGCGGAGGTTATATTGGCTCACTTCGATCAATATCGTCAGgttggttttgtgttggtcctaccgtgatccgtttctcataatgtagctttttttttttaattattcaaatgaagttgctctttgttga--attgataaattg--------------------------
||||| |||||  |||| ||||| ||||||||||||||||||||||||   |||| ||| || ||||| ||| |||| |||||||     ||||||||| |||||       || | |     || | || |  |||  | | |   | |   ||  ||   || |||   || |||   ||||  || ||||   |                           
ATTAGGACTCATGCTATAAGGAAAGCTCATGAGAATATTGATAGGACTCTTAAGGCTGCTGAAGTTATTTTGTCTCAATTCGATCTCCTCCGTCAGgtttgttttaca--aatcttgct----tctgattttactaacatggatcggtataaatagatag--aattgataatgatctacattgagaatagatagtctttgattatgctctcaattcaattctag

upper sequence: GLYMA20G33590.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0073g00170.t01 (Vitis vinifera), 5'ss of exon 2
ATTAGAACTCACTCTATTAGGAAGGCTCATGAGAATATTGATAGGACTTCGAAGGTTGCGGAGGTTATATTGGCTCACTTCGATCAATATCGTCAGgttgg-ttttgtgttggtcctaccgtgatccgtttctcataatgtagctttttttttttaattattcaaatgaagttgctctttgttgaattgataaattg
|||||||| || |||||| | |  ||||||||||||||||| | ||||| ||||| ||| ||||||||||||||||| ||||| |  |||||||||||||| ||||  || ||  ||    || | |  ||  |  |   ||   || | |  |  |||      ||||| ||  |  ||  |  | || |    | 
ATTAGAACGCATTCTATTCGAAGAGCTCATGAGAATATTGACAAGACTTTGAAGGCTGCCGAGGTTATATTGGCTCAATTCGACCTTTATCGTCAGgttggattttcagtaggcacttaattggttcaatttaccgagattattattatctggtggattccctgcatgaacttcatagtttattcaatgttgttgt-