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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaaagtttataagcttcacttttttaaaattgttctacaatagaaaaataacaactatcttctctgcattgtctcaataaaatgcacagCTAGCCCTCAAGGCAGGTGTCTTCTATGATAAAGTGTCAAATGTGACAATATGGGGCAACCACTCAACTACTCAG

Basic information

species Glycine max
transcript GLYMA20G33380.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33380.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv13s0019g05250.t01 (Vitis vinifera), 3'ss of exon 7
gtaacaaagtttataagcttcactt-------ttttaaaattgt-tctacaataga-aaaataacaactatcttctctgcattgtctcaataaaat--gcacagCTAGCCCTCAAGGCAGGTGTCTTCTATGATAAAGTGTCAAATGTGACAATATGGGGCAACCACTCAACTACTCAG
|| |   || || | | | | || |       |  || | |  | | ||  ||  | ||||  | | | ||  |   || ||    || ||   ||  |  ||||| || ||||| |||||||||||||||||||||||||||||||| || || ||||| || ||||| || ||||||
gttaagtagcttgtgaccattacctcagtccatgatacagtcatgtttattatgaacaaaaggaaatcaataattgttgtatgaattcgatgtgatttgtgcagCTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctacaatagaaaaataacaactatcttctctgcattgtctcaataaaatgcacagCTAGCCCTCAAGGCAGGTGTCTTCTATGATAAAGTGTCAAATGTGACAATATGGGGCAACCACTCAACTACTCAG
           aaataac  putative branch site (score: 2)
     atagaaaaataacaa  TA-rich tract