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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGCCCTCAAGGCAGGTGTCTTCTATGATAAAGTGTCAAATGTGACAATATGGGGCAACCACTCAACTACTCAGgtcattttaggatcattactagaataatctgcctgaactgaatatatctttaactctcttgtatgatattggtgttatcttgttaatag

Basic information

species Glycine max
transcript GLYMA20G33380.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33380.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os08g44810.1 (Oryza sativa), 5'ss of exon 8
CTAGCCCTCAAGGCAGGTGTCTTCTATGATAAAGTGTCAAATGTGACAATATGGGGCAACCACTCAACTACTCAGgtcattttaggatc----attactagaataatctgcctgaactgaatatatctttaactctcttgtatgatattggtgtt--atcttgttaatag-----------------
|| || || || || ||||| || ||||| ||||| |||||| |||| || ||||| ||||||||||| |||||||| |   || |||     |||||| |  |  | |      |||    ||   | || || ||| ||  | || |  ||||   |||| ||| |                   
CTGGCACTAAAAGCGGGTGTATTTTATGACAAAGTATCAAATATGACTATTTGGGGGAACCACTCAACAACTCAGgtgaagatatgattagatattactggctttctattgtaatacttccaattattgtacctttct-gtggggtacttttgtttattcttattactgatgatttgctctgagtag

upper sequence: GLYMA20G33380.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv13s0019g05250.t01 (Vitis vinifera), 5'ss of exon 8
CTAGCCCTCAAGGCAGGTGTCTTCTATGATAAAGTGTCAAATGTGACAATATGGGGCAACCACTCAACTACTCAGgtcattttaggatcattactagaataatctgcctgaactgaatatatctttaactctcttgtatgatattggt-gttatcttgttaatag-
|| || ||||| |||||||||||||||||||||||||||||||| || || ||||| || ||||| || |||||||| ||   |       |     || ||  ||  |  |   |||||   ||  | | |||||||    | |  |   |||  | || ||   
CTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAGgtgatcgaatagattctgtcttaagaacatgaatagat--aatattctttctattttcttgtaaaggaatactcagtataattttcatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6455028|gb|AW185711.1|AW185711
EST:     ATAAAGTGTCAAATGTGACAATATGGGGCAACCACTCAACTACTCAG                         GTCCCTGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
genomic: ATAAAGTGTCAAATGTGACAATATGGGGCAACCACTCAACTACTCAGgtcattttag ... ttgttaatagGTCCCTGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
EST: gi|22539986|gb|BU089829.1|BU089829
EST:     AAGTGTCAAATGTGACAATATGGGGCAACCACTCAACTACTCAG                         GTCCCTGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG
genomic: AAGTGTCAAATGTGACAATATGGGGCAACCACTCAACTACTCAGgtcattttag ... ttgttaatagGTCCCTGACTTCTTAAATGCTAGAATTGATGGTTTGCCAGTCAAAGAGGTG