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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGGAAGATCATCAGCTGCATCAACTTCTGTGTCAATTGTTGATGCCATAAGATCTTTAGTAACTCCTACTCCCGAGGGTGATTGGTTTTCTTCTGGTgtaagttgatattagttgaataacctcatgtatttgttaaaaaattagatgagtttttcagcaagaatacaccttgttttacaacaaattgttttaactg...

Basic information

species Glycine max
transcript GLYMA20G33380.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33380.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G129513_T01 (Zea mays), 5'ss of exon 10
ATGGGGAAGATCATCAGCTGCATCAACTTCTGTGTCAATTGTTGATGCCATAAGATCTTTAGTAACTCCTACTCCCGAGGGTGATTGGTTTTCTTCTGGTgtaagttgatattagttgaataacctcatgtatttgttaaaaaattagatgagtttttcagcaagaatacaccttgttttacaacaaattgttttaactg
|||||| ||||||||||||||||| ||  |||| || || || ||||| || |||||  | ||||||||||| || || ||||| ||||||||| | || |||||||        ||||    |||  || |    | |||   ||   |  |  || |   ||    | |    | |  | || | |  |         
ATGGGGCAGATCATCAGCTGCATCGACCGCTGTTTCGATAGTGGATGCTATTAGATCCCTCGTAACTCCTACCCCAGAAGGTGACTGGTTTTCTACAGGGgtaagtt--------ttgag--gcctt-tgaaccgatcaaatctttgtttcggcattcctctaatggaaaaggc-gataaaaaaaatacag---------

upper sequence: GLYMA20G33380.1 (Glycine max), 5'ss of exon 12
lower sequence: AT5G58330.3 (Arabidopsis thaliana), 5'ss of exon 8
ATGGGGAAGATCATCAGCTGCATCAACTTCTGTGTCAATTGTTGATGCCATAAGATCTTTAGTAACTCCTACTCCCGAGGGTGATTGGTTTTCTTCTGGTgtaagttgatattagttgaataacctcatgtatttgttaaaaaattagatgagtttttcagcaagaatacaccttgttttacaacaaattgttttaactg
||||||  |||| || ||||| || ||| |||| || ||||||||||| ||||  ||| | |||||||||||||| |||||||||||||||||  |||| |||  |     ||       ||  ||||| |   |   || ||  |||||  |||    ||    || |    |||| |||    |||||          
ATGGGGTCGATCTTCTGCTGCTTCTACTGCTGTTTCCATTGTTGATGCTATAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGGgtacatcttcttt-------tacactcatttggataacaataagatagattggttca--agttttaacaggg-ttgtgttaatgtaaatttag-------

upper sequence: GLYMA20G33380.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv13s0019g05250.t01 (Vitis vinifera), 5'ss of exon 10
ATGGGGAAGATCATCAGCTGCATCAACTTCTGTGTCAATTGTTGATGCCATAAGATCTTTAGTAACTCCTACTCCCGAGGGTGATTGGTTTTCTTCTGGTgtaagttgatattagttgaataacctca----tgtatttgtt-----------aaaaaattagatgagtttttcagcaagaatac--------accttgttttacaacaaattgttttaactg------------------------------------------------------------
|||||| ||||| || |||||||||||| ||||||| || ||||||||||| |  ||| |||||||||| || || ||||||||||||||||||||||| |||||||   ||  |  | |||   |      | |||||| |           || |||| |  |   | ||||  |||   ||         | | | | | | |  |  ||| |  |  ||                                                            
ATGGGGGAGATCTTCTGCTGCATCAACTGCTGTGTCGATCGTTGATGCCATGAAGTCTCTAGTAACTCCCACCCCTGAGGGTGATTGGTTTTCTTCTGGAgtaagttttcatctgccgtatatggttgctgttctatttggttagtcttatgtaagaaatgaactagatctttccacaaacgtattgtttaagatcatatataatagtaggttgctgcagttgcatttttgtttatgattagttgttagtctccagtctcaccatttcaaacctcaaatatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6455028|gb|AW185711.1|AW185711
EST:     TA-GATCTTTAGTAACTCCTACTCCCGAGGGTGATTGGTTTTCTTCTGGT                         GTATATAGCAATGGAAATCCTTATGGAATAGCTGAAGGTATTGTTTTCAGT
genomic: TAAGATCTTTAGTAACTCCTACTCCCGAGGGTGATTGGTTTTCTTCTGGTgtaagttgat ... gcaataccagGTATATAGCAATGGAAATCCTTATGGAATAGCTGAAGGTATTGTTTTCAGT
EST: gi|22539986|gb|BU089829.1|BU089829
EST:     TAAGATCTTTAGTAACTCCTACTCCCGAGGGTGATTGGTTGTCTTCTGGT                         GTATATAGCAATGGAAATCCTTATGGAATAGCTGAAGGTATTGTTTTCAGT
genomic: TAAGATCTTTAGTAACTCCTACTCCCGAGGGTGATTGGTTTTCTTCTGGTgtaagttgat ... gcaataccagGTATATAGCAATGGAAATCCTTATGGAATAGCTGAAGGTATTGTTTTCAGT