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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatgataatgaaatttaaaccatacttattgctttctgctaaagtgaagttaattataatgacattataccttttgtacaacagGGAAGAGCTTTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAA

Basic information

species Glycine max
transcript GLYMA20G33380.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33380.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv13s0019g05250.t01 (Vitis vinifera), 3'ss of exon 5
------------gtaaaatgataatgaaatttaaaccatacttattgcttt--------ctgctaaagtgaagttaattataatgacattataccttttgtacaacagGGAAGAGCTTTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAA
             | | ||  |  |   |   ||   | |   | ||            |||||||   |    |   | |||  | | | |   ||   ||  |||||||| |||| | ||||| || |||||||| ||||||||||| || |||||||| ||||| ||||| || ||
gtactattagtatttagatttttttatcacacaagttacaaccactgtaaaaaaagaaactgctaattggtgccttcctctaaataaactgtggtttaaatattacagGGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctttctgctaaagtgaagttaattataatgacattataccttttgtacaacagGGAAGAGCTTTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAA
                                      tacctttt  CT-rich tract
                 aagttaattataatga  TA-rich tract