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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTCCGCTGCTATTCAAGGAGAGCGGTACCTTCTAATATTTGGTGGTTGCTCTCATTCTATCTTCTTCAATGATCTTCATTTATTAGACATGCAAACAgtaagtaaatattatttcccatctttttctttgcatgtttaattaaaccaaagtattaataagcttgtttcttgcattctgaggcaatcagctatttctg...

Basic information

species Glycine max
transcript GLYMA20G33350.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33350.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G04420.1 (Arabidopsis thaliana), 5'ss of exon 8
TCATTCCGCTGCTATTCAAGGAGAGCGGTACCTTCTAATATTTGGTGGTTGCTCTCATTCTATCTTCTTCAATGATCTTCATTTATTAGACATGCAAACAgtaagtaaatattatttcccatctttttctttgcatgtttaattaaaccaaagtattaataagcttgtttcttgcattctgaggcaatcagctatttctg
|||  | ||||| |  ||    || || |||||  | || ||||||||||| |||||||| || |||| || |||||||||| |  | ||| ||||||||||||||||  |   |||       |||| |||||   |||| | | |         | || |  ||  ||    |||                       
TCACACAGCTGCCACACATTCTGATCGCTACCTCTTGATTTTTGGTGGTTGTTCTCATTCGATTTTCTACAGTGATCTTCATATCCTTGACTTGCAAACAgtaagtaagcacattttattggtattttttttgccaatttagtcatatt------ctgatgaatttactttactcatggcag------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21594840|gb|BQ610284.1|BQ610284
EST:     GCTCTCATTCTATCTTCTTCAATGATCTTCATTTATTAGACATGCAAACA                         ATGGAGTGGTCCCAACCACAAACTCAAGGTGATTTAGTATCTCCCAGGGCA
genomic: GCTCTCATTCTATCTTCTTCAATGATCTTCATTTATTAGACATGCAAACAgtaagtaaat ... cttggtgcagATGGAGTGGTCCCAACCACAAACTCAAGGTGATTTAGTATCTCCCAGGGCA
EST: gi|7795136|gb|AW780533.1|AW780533
EST:     CTTCAATGATCTTCATTTATTAGACATGCAAACA                         ATGGAGTGGTCCCAACCACAAACTCAAGGTGATTTAGTATCTCCCAGGGCA
genomic: CTTCAATGATCTTCATTTATTAGACATGCAAACAgtaagtaaat ... cttggtgcagATGGAGTGGTCCCAACCACAAACTCAAGGTGATTTAGTATCTCCCAGGGCA
EST: gi|8283347|gb|BE020908.1|BE020908
EST:     GCTCTCATTCTATCTTCTTCAATGATCTTCATTTATTAGACATGCAAACA                         ATGGAGTGGTCCCAACCACAAACTCAAGGTGATTTAGTATCTCCCAGGGCA
genomic: GCTCTCATTCTATCTTCTTCAATGATCTTCATTTATTAGACATGCAAACAgtaagtaaat ... cttggtgcagATGGAGTGGTCCCAACCACAAACTCAAGGTGATTTAGTATCTCCCAGGGCA