1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacaatttcactttcctattttggagtatagcatggctttatggttgttgtgtaggttgagtatactaatagtaatgttcgtttccagGCCAAAATTGCAGAACTCCAGAAGTTGCTGGAATCAATGCAGTCTGTGGAAGAGGAGGTACAGGCTCTTCGTGAAAAGAAATCTGCTCTGGACCAGGAGA
species | Glycine max |
transcript | GLYMA20G33350.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTTAACTTGGAG GCCAAAATTGCAGAACTCCAGAAGTTGCTGGAATCAATGCAGTCTGTGGAAEST: gi|57575832|gb|CX548803.1|CX548803
genomic: CAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTTAACTTGGAGgtacaatttc ... tcgtttccagGCCAAAATTGCAGAACTCCAGAAGTTGCTGGAATCAATGCAGTCTGTGGAA
EST: CAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTTAACTTGGAG GCCAAAATTGCAGAACTCCAGAAGTTGCTGGAATCAATGCAGTCTGTTGAAEST: gi|254315619|gb|GR825428.1|GR825428
genomic: CAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTTAACTTGGAGgtacaatttc ... tcgtttccagGCCAAAATTGCAGAACTCCAGAAGTTGCTGGAATCAATGCAGTCTGTGGAA
EST: CAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTTAACTTGGAG GCCAAAATTGCAGAACTCCAGAAGTTGCTGGAATCAATGCAGTCTGTGGAAEST: gi|254315620|gb|GR825429.1|GR825429
genomic: CAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTTAACTTGGAGgtacaatttc ... tcgtttccagGCCAAAATTGCAGAACTCCAGAAGTTGCTGGAATCAATGCAGTCTGTGGAA
EST: CAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTTAACTTGGAG GCCAAAATTGCAGAACTCCAGAAGTTGCTGGAATCAATGCAGTCTGTGGAAEST: gi|58025303|gb|CX712044.1|CX712044
genomic: CAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTTAACTTGGAGgtacaatttc ... tcgtttccagGCCAAAATTGCAGAACTCCAGAAGTTGCTGGAATCAATGCAGTCTGTGGAA
EST: CAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTTAACTTGGAG GCCAAAATTGCAGAACTCCAGAAGTTGCTGGAATCAATGCAGTCTGTTGAAEST: gi|209697796|gb|BW670063.1|BW670063
genomic: CAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTTAACTTGGAGgtacaatttc ... tcgtttccagGCCAAAATTGCAGAACTCCAGAAGTTGCTGGAATCAATGCAGTCTGTGGAA
EST: CAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTTAACTTGGAG GCCAAAATTGCAGAACTCCAGAAGTTGCTGGAATCAATGCAGTCTGTGGAAEST: gi|58017943|gb|CX704685.1|CX704685
genomic: CAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTTAACTTGGAGgtacaatttc ... tcgtttccagGCCAAAATTGCAGAACTCCAGAAGTTGCTGGAATCAATGCAGTCTGTGGAA
EST: CAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTTAACTTGGAG GCCAAAATTGCAGAACTCCAGAAGTTGCTGGAATCAATGCAGTCTGTTGAA
genomic: CAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTTAACTTGGAGgtacaatttc ... tcgtttccagGCCAAAATTGCAGAACTCCAGAAGTTGCTGGAATCAATGCAGTCTGTGGAA
tggctttatggttgttgtgtaggttgagtatactaatagtaatgttcgtttccagGCCAAAATTGCAGAACTCCAGAAGTTGCTGGAATCAATGCAGTCTGTGGAAGAGGAGGTACAGGCTCTTCGTGAAAAGAAATCTGCTCTGGACCAGGAGA
tactaat putative branch site (score: 1)
ttcgtttcc putative PPT
tatactaatagtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaatttcactttcctattttggagtatagcatggctttatggttgttgtgtaggttgagtatactaatagtaatgttcgtttccagGCCAAAATTGCAGAACTCCAGAAGTTGCTGGAATCAATGCAGTCTGTGGAAGAGGAGGTACAGGCTCTTCGTGAAAAGAAATCTGCTCTGGACCAGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA