Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTGATATTGTTTGGTGGAGAAGAAATGAGCAGGAAGCTGTTGAATGATGTCCATGTTCTTGATCTTGAAAGTATGACTTGGGAAATGATAAAGACTACgtaagtggtatctattttacactttcagaaagtgtgtttacatgctttagagaagttccatatgaccataccaatttcttgcattttgatag

Basic information

species Glycine max
transcript GLYMA20G33350.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33350.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0019g05290.t01 (Vitis vinifera), 5'ss of exon 6
GAGTGATATTGTTTGGTGGAGAAGAAATGAGCAGGAAGCTGTTGAATGATGTCCATGTTCTTGATCTTGAAAGTATGACTTGGGAAATGATAAAGACTACgtaagtggtatctattttacactttcagaaagtgtgtttacatgcttt-agagaagttccatatgaccataccaatttcttgcattttgatag
|| ||||| |||||||||||||||| | ||||||  | ||| ||||||||||||||||||||||||| || |  |||||||||||  || |  || |||||||||   |||||| |||||  | | ||||         || |||||| |||   ||||    |        || |||||||  |||||||||
GATTGATAATGTTTGGTGGAGAAGATAGGAGCAGACATCTGCTGAATGATGTCCATGTTCTTGATCTAGATACAATGACTTGGGATGTGGTGGAGGCTACgtaag---tatctaatttactttatgagaagtcaca--aacttgctttcagaagggttctgctt--------cattttcttgtgttttgatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21594840|gb|BQ610284.1|BQ610284
EST:     GTCCATGTTCTTGATCTTGAAAGTATGACTTGGGAAATGATAAAGACTAC                         GCAGACACCTCCAGCTCCTAGATACGATCATTCCGCTGCTATTCAAGGAGA
genomic: GTCCATGTTCTTGATCTTGAAAGTATGACTTGGGAAATGATAAAGACTACgtaagtggta ... attttgatagGCAGACACCTCCAGCTCCTAGATACGATCATTCCGCTGCTATTCAAGGAGA
EST: gi|192327474|gb|FK017831.1|FK017831
EST:     GTCCATGTTCTTGATCTTGAAAGTATGACTTGGGAAATGATAAAGACTAC                         GCAGACACCTCCA
genomic: GTCCATGTTCTTGATCTTGAAAGTATGACTTGGGAAATGATAAAGACTACgtaagtggta ... attttgatagGCAGACACCTCCA
EST: gi|8283347|gb|BE020908.1|BE020908
EST:     GTCCATGTTCTTGATCTTGAAAGTATGACTTGGGAAATGATAAAGACTAC                         GCAGACACCTCCAGCTCCTAGATACGATCATTCCGCTGCTATTCAAGGAGA
genomic: GTCCATGTTCTTGATCTTGAAAGTATGACTTGGGAAATGATAAAGACTACgtaagtggta ... attttgatagGCAGACACCTCCAGCTCCTAGATACGATCATTCCGCTGCTATTCAAGGAGA