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...acctttgcatagagaggagccttttggcacttagtttttagtttggtgtgttccatatagtggattctgtggctgatggctggggcccttgcaaattcagGTTTTTGTTATGAGACCCAAGGCCAAGGATACCATGCGTCCCAAGATTTTTCAATCACCTGCTGCCGCGGCTGCTGCGGCTTCTGTTACTTCTGCTTATG
species | Glycine max |
transcript | GLYMA20G33350.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAAAGTATTTGTTAGCATTTGGAGGCTATAATGGGAGATATAGCAATGAG GTTTTTGTTATGAGACCCAAGGCCAAGGATACCATGCGTCCCAAGATTTTTEST: gi|57575832|gb|CX548803.1|CX548803
genomic: AAAAGTATTTGTTAGCATTTGGAGGCTATAATGGGAGATATAGCAATGAGgtgtgtgctg ... gcaaattcagGTTTTTGTTATGAGACCCAAGGCCAAGGATACCATGCGTCCCAAGATTTTT
EST: AAAAGTATTTGTTAGCATTTGGAGGCTATAATGGGAGATATAGCAATGAG GTTTTTGTTATGAGACCCAAGGCCAAGGATACCATGCGTCCCAAGATTTTTEST: gi|254315619|gb|GR825428.1|GR825428
genomic: AAAAGTATTTGTTAGCATTTGGAGGCTATAATGGGAGATATAGCAATGAGgtgtgtgctg ... gcaaattcagGTTTTTGTTATGAGACCCAAGGCCAAGGATACCATGCGTCCCAAGATTTTT
EST: AAAAGTATTTGTTAGCATTTGGAGGCTATAATGGGAGATATAGCAATGAG GTTTTTGTTATGAGACCCAAGGCCAAGGATACCATGCGTCCCAAGATTTTTEST: gi|9440171|gb|BE440681.1|BE440681
genomic: AAAAGTATTTGTTAGCATTTGGAGGCTATAATGGGAGATATAGCAATGAGgtgtgtgctg ... gcaaattcagGTTTTTGTTATGAGACCCAAGGCCAAGGATACCATGCGTCCCAAGATTTTT
EST: AAAAGTATTTGTTAGCATTTGGAGGCTATAATGGGAGATATAGCAATGAG GTTTTTGTTATGAGACCCAAGGCCAAGGATACCATGCGTCCCAAGATTTTTEST: gi|58025303|gb|CX712044.1|CX712044
genomic: AAAAGTATTTGTTAGCATTTGGAGGCTATAATGGGAGATATAGCAATGAGgtgtgtgctg ... gcaaattcagGTTTTTGTTATGAGACCCAAGGCCAAGGATACCATGCGTCCCAAGATTTTT
EST: AAAAGTATTTGTTAGCATTTGGAGGCTATAATGGGAGATATAGCAATGAG GTTTTTGTTATGAGACCCAAGGCCAAGGATACCATGCGTCCCAAGATTTTTEST: gi|58017943|gb|CX704685.1|CX704685
genomic: AAAAGTATTTGTTAGCATTTGGAGGCTATAATGGGAGATATAGCAATGAGgtgtgtgctg ... gcaaattcagGTTTTTGTTATGAGACCCAAGGCCAAGGATACCATGCGTCCCAAGATTTTT
EST: AAAGTATTTGTTAGCATTT-GAGGGCTATAATGGGAGATATAGCAATGAG TTTTTTGTTATGAGACCCAAGGCCAAGGATACCATGCGTCCCAAGATTTTT
genomic: AAAGTATTTGTTAGCATTTGGA-GGCTATAATGGGAGATATAGCAATGAGgtgtgtgctg ... gcaaattcagGTTTTTGTTATGAGACCCAAGGCCAAGGATACCATGCGTCCCAAGATTTTT
gtgtgttccatatagtggattctgtggctgatggctggggcccttgcaaattcagGTTTTTGTTATGAGACCCAAGGCCAAGGATACCATGCGTCCCAAGATTTTTCAATCACCTGCTGCCGCGGCTGCTGCGGCTTCTGTTACTTCTGCTTATG
ggctgat putative branch site (score: 4)
cccttgc putative PPT
atatagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctttgcatagagaggagccttttggcacttagtttttagtttggtgtgttccatatagtggattctgtggctgatggctggggcccttgcaaattcagGTTTTTGTTATGAGACCCAAGGCCAAGGATACCATGCGTCCCAAGATTTTTCAATCACCTGCTGCCGCGGCTGCTGCGGCTTCTGTTACTTCTGCTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
-cctttgc
- - - - - - - - - -ccttttg
- - - - - - - - - - - - - - - - - - - - - -tggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggctggg