Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctatgatgtattttctcactgaaatctaaattgaaaattttcaatataatccttcatatgatattcaggtttgttttgcatctagcattgcaccttaccccctgcaccttttgttttttggtagTGATGGATGGGATAGGACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCACAGGGTTTCAG

Basic information

species Glycine max
transcript GLYMA20G33040.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33040.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os08g44260.1 (Oryza sativa), 3'ss of exon 13
gtgctatgatgtattttctcactgaaatctaaattgaaaattttcaatataatccttcatatgatattcaggtttgttt-tgcatctagc-attgcaccttaccccctgcaccttttgttttttggtagTGATGGATGGGATAGGACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCACAGGGTTTCAG
                             | | || |   |  ||  ||| |||  |    |  | ||   || | |   | ||  | ||   ||||  | |    ||    || || | |||| | |||||||| |||||  | ||||  ||||||||| ||||||||  |||||||||||||||||||||| | || ||||  ||||| |||
-----------------------------tgatttcatcttagtctgtatgatctctatagttttcttgctgtgtatccctacacattgctgatgcatatcaaattctctcactattttgtttttgcagTGATGGTTGGGACCGCACAACTCAGTTGGTTGCACTTGCTTGTTTGTTGCTTGATCCATATTATAGAACGTTCAATGGGTTCCAG

upper sequence: GLYMA20G33040.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G046050_T01 (Zea mays), 3'ss of exon 1
gtgctatgatgtattttctcactgaaatctaaattgaaaattttcaatataatccttcatatgatattcaggtttgttttgcatctagcattgcaccttaccccctgcaccttttgttttttggtagTGATGGATGGGATAGGACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCACAGGGTTTCAG
                  ||  |    | | |  |||  ||  |   | | |||  | ||| | | |   | ||||| ||   | ||||||   |  | |       |    ||||||| |  | ||||||||||||||  | |||| |||||||||||||||||||  ||| ||||||||||| |||||||| || ||||  || || |||
-----------------atcctttgggtgtcatctgaggatcct--gtgtgatctct-ata-gctttgtcgctttgtctt---tgtagcatctgaa-tgatttttccccttctttgtttct--gcagTGATGGATGGGACCGCACAACCCAGTTGGTTTCACTTGCTTGTTTATTGCTTGATCCCTATTATCGAACTTTCAGTGGATTCCAG

upper sequence: GLYMA20G33040.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G449163_T01 (Zea mays), 3'ss of exon 5
gtgctatgatgtattttctcactgaaatctaaattgaaaattttcaatataatccttcatatgatattcaggtttgttttgcatctagcattgcaccttaccccctgcaccttttgttttttggtagTGATGGATGGGATAGGACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCACAGGGTTTCAG
                      ||||   |   ||     |  ||   |  |||||   |    | |  || ||||| ||   | ||||||   |  | |     | |    | ||||| |  | ||||||||||||||  | |||| |||||||||||||||||||  ||| ||||||||||| |||||||| || ||||  || || |||
--------------------gatgaataatcctttaggtgtcatctg-aggatcctgtgtgatctctatagctttgtctt---tgtagcatctgaa-tgatttttttccttctctgtttct--gcagTGATGGATGGGACCGCACAACCCAGTTGGTTTCACTTGCTTGTTTATTGCTTGATCCCTATTATCGAACTTTCAGTGGATTCCAG

upper sequence: GLYMA20G33040.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv13s0074g00300.t01 (Vitis vinifera), 3'ss of exon 13
gtgctatgatgtattttctcactgaaatctaaattgaaaattttcaatataatccttcatatgatattcaggtttgttttgcatctagcattgcaccttaccccctgcaccttttgttttttg--gtagTGATGGATGGGATAGGACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCACAGGGTTTCAG
                   |||     |||   || |||| |   ||| |  ||| |         || |  | |  ||  || ||| | |||    |||    | |||       || ||||  ||||||||||||||||||| ||||  ||||| || |||||||| |||||| ||||||||||||| ||||||||||| | |||||| |||
-------------------caccatgttctttttttaaaactgaaaatcttctccct---------tttaattataattaacagcta-ctttggtatttaatatccgcattcaaaattgtttgctgtagTGATGGATGGGATAGAACAACTCAGTTAGTCTCACTTGCCAATTTGATGCTTGATCCATACTATCGGACATTTAAAGGGTTCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttttgcatctagcattgcaccttaccccctgcaccttttgttttttggtagTGATGGATGGGATAGGACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCACAGGGTTTCAG
                      accttac  putative branch site (score: 3)
                       ccttaccccctgcacc  CT-rich tract
                                       ttttgtttttt  TA-rich tract