Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGTTGATTGTGTTTCGCAATTATTACGGATATATCCTTTTGCTTTTGAGTTTTCTGCGgtatgtatccttgaatatttttgtatttgttttgatgcatggttttctttctcgtatctttccttctagtagcttctactttttcatgatccag

Basic information

species Glycine max
transcript GLYMA20G33040.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33040.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G10550.1 (Arabidopsis thaliana), 5'ss of exon 16
TGGGTTGATTGTGTTTCGCAATTATTACGGATATATCCTTTTGCTTTTGAGTTTTCTGCGgtatgtatcc--ttgaatatttttgtatttgttttgatgcatggttttctttc-tcgtatctttccttctagtagcttctactttttcatgatccag
||| ||||| | ||||| ||  || | ||||| ||||||| |||||||||||||||| ||||||||||    |  || || ||| |    | ||| |||      ||  |    |  ||    |      | | || |  | | |||  || | |||
TGGATTGATAGCGTTTCACAGCTAATGCGGATGTATCCTTGTGCTTTTGAGTTTTCTCCGgtatgtatgaagtcaaacatatttctgaa-gatttcatgttcaacttcttccagtaataatagtgtagtcatttgccttca-tatttggtgttgcag

upper sequence: GLYMA20G33040.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv13s0074g00300.t01 (Vitis vinifera), 5'ss of exon 16
TGGGTTGATTGTGTTTCGCAATTATTACGGATATATCCTTTTGCTTTTGAGTTTTCTGCGgtatgtatccttgaatatttttgtatttgttttgatgcatggttttctttctcgtatct---------ttccttctagtagcttctactttttcatgatccag
||||| |||||||| || ||| | || ||||| |||||||||||||||||||| ||  |||||||||    | || | || |   ||  |||    | |  | ||    |    |||           || ||||  |     | || | ||| ||||| |||
TGGGTCGATTGTGTATCACAACTGTTGCGGATGTATCCTTTTGCTTTTGAGTTCTCCTCGgtatgtactagtaaa-acttgttctttgatttcacggaacagattatcattgtatattcaacatgaaattgcttcctgactggtttattgtttgatgattcag