Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCTATATATTGTTGATGCACGGCCTAGGAAAAATGCATTGGCTAATGGTGCCATGGGAGGTGGTTCAGAATCATCATCAAACTATTTTCAATCCGAGgtctgtaataagcttgaagtgtccagttgtgatttttgttttccagttataattataaatttgactttattttctaactatctaaattcttattttatattatcag

Basic information

species Glycine max
transcript GLYMA20G33040.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33040.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G10550.1 (Arabidopsis thaliana), 5'ss of exon 11
AAAGCTATATATTGTTGATGCACGGCCTAGGAAAAATGCATTGGCTAATGGTGCCATGGGAGGTGGTTCAGAATCATCATCAAACTATTTTCAATCCGAGgtctgtaataagcttgaagtgtccagttgt--gatttttgttttccagttataattataaatttgactttattttctaactatctaaattcttattttatattatcag
 ||||| ||||||| ||||||| | ||||||||||||||||| || ||||| || ||||||||||| ||||||||||| || || ||||||||||| || ||  || |   |  |     ||    || |   | | ||| | | |   |  ||||  |    ||| |||| |  |||  | |||   |||                 
GAAGCTTTATATTGCTGATGCAAGACCTAGGAAAAATGCATTAGCCAATGGAGCAATGGGAGGTGGCTCAGAATCATCTTCCAATTATTTTCAATCTGAAgttagtgaatggtcttggtggtttgattattaaagtcttgatcttc---tggaattcca----tgattttagtgactatgtttctttcttcag---------------

upper sequence: GLYMA20G33040.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G04540.1 (Arabidopsis thaliana), 5'ss of exon 11
AAAGCTATATATTGTTGATGCACGGCCTAGGAAAAATGCATTGGCTAATGGTGCCATGGGAGGTGGTTCAGAATCATCATCAAACTATTTTCAATCCGAGgtctgtaataagcttgaagtgtccagttgtgatttttgttttccagttataattataaatttgactttattttctaactatctaaattcttattttatattatcag
 ||||| ||||| || |||||| | ||||||||||||||||| || ||||| || | |||||| || ||||||||||| ||||| ||||| ||||| || |||||||    || | |||||    |||  ||  |   | ||     |     | |  |    |||   | || | |||  | |  || ||  || |         
GAAGCTTTATATCGTAGATGCAAGACCTAGGAAAAATGCATTAGCAAATGGAGCAAAGGGAGGAGGCTCAGAATCATCTTCAAATTATTTGCAATCTGAAgtctgtacatggcctaaagtg----gtttggagctcaatattttgtct-----tctgga----actgcttgttttgactgacaatgttttttcttcag--------