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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatccttgaatatttttgtatttgttttgatgcatggttttctttctcgtatctttccttctagtagcttctactttttcatgatccagGCTTTCCTGGTGGACTTCGTAGACTGCATGCTTTCTTGTCGTTTTGGAAACTTCTTATGTAACAG

Basic information

species Glycine max
transcript GLYMA20G33040.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33040.1 (Glycine max), 3'ss of exon 10
lower sequence: AT3G10550.1 (Arabidopsis thaliana), 3'ss of exon 16
----gtatgtatccttgaatatttttgtatttgttttgatgcatggttttctttc-tcgtatctttccttctagtagcttctactttttcatgatccagGCTTTCCTGGTGGACTTCGTAGACTGCATGCTTTCTTGTCGTTTTGGAAACTTCTTATGTAACAG
    ||||| |  |    |||||| || |   | ||| |||      ||  |    |  ||    |      | | || |  | | |||  || | ||| |||||||||| || ||  | || ||| ||||||| ||||||||||| ||||||||||| |||||
gtatgtatgaagtcaaacatatttctgaa---gatttcatgttcaacttcttccagtaataatagtgtagtcatttgccttca-tatttggtgttgcagACTTTCCTGGTAGATTTTATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGCAACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttttctttctcgtatctttccttctagtagcttctactttttcatgatccagGCTTTCCTGGTGGACTTCGTAGACTGCATGCTTTCTTGTCGTTTTGGAAACTTCTTATGTAACAG
                                 cttctactttttcat  CT-rich tract
                                     tacttttt  TA-rich tract