1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctgatacatctccattcttatatctaaaatctgatttagaatacgtggtttgattgcatagttttgtgggtacttgatactatttttattctttttctagGTTGGAAGCAGGTTCGGGGAGAGTACTTTTAAACTGGGATCCATACTAACTGATGGTCAAGTTGGCATTTTTAAGGATAGATCTGCTGCTGCCATGTCCT
species | Glycine max |
transcript | GLYMA20G32980.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACAGTTCAAGTCTGGGGGTGGCGGCACCATTACTGAAGTCTTTTATGCAG GTTGGAAGCAGGTTCGGGGAGAGTACTTTTAAACTGGGATCCATACTAACT
genomic: ACAGTTCAAGTCTGGGGGTGGCGGCACCATTACTGAAGTCTTTTATGCAGgtatcatcaa ... ctttttctagGTTGGAAGCAGGTTCGGGGAGAGTACTTTTAAACTGGGATCCATACTAACT
tggtttgattgcatagttttgtgggtacttgatactatttttattctttttctagGTTGGAAGCAGGTTCGGGGAGAGTACTTTTAAACTGGGATCCATACTAACTGATGGTCAAGTTGGCATTTTTAAGGATAGATCTGCTGCTGCCATGTCCT
acttgat putative branch site (score: 5)
tactatttttattctt CT-rich tract
ttgatactatttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgatacatctccattcttatatctaaaatctgatttagaatacgtggtttgattgcatagttttgtgggtacttgatactatttttattctttttctagGTTGGAAGCAGGTTCGGGGAGAGTACTTTTAAACTGGGATCCATACTAACTGATGGTCAAGTTGGCATTTTTAAGGATAGATCTGCTGCTGCCATGTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
ctgatac
- - - - - -ccattct
- - - - - - - - - - - - - - - - - - - - - - - - - tgattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtggg