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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGCAGGACCAAAGTTTGACAACCTCAGCCATTAGAGAACGTTCAAATCAATTGTTAAATCGTCTTTCTCAGAAACTGGATCCCATAGACTGGCTTACgtaagtctcattcttccgatcaagttgttcctttgttttagtatgtggtaggaacacaagatgtgcaatccatcaacagttggcttatgtaatgattaaa...

Basic information

species Glycine max
transcript GLYMA20G32980.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32980.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G16300.1 (Arabidopsis thaliana), 5'ss of exon 3
GGAAGCAGGACCAAAGTTTGACAACCTCAGCCATTAGAGAACGTTCAAATCAATTGTTAAATCGTCTTTCTCAGAAACTGGATCCCATAGACTGGCTTACgtaag---tctcattctt-----ccgatcaagttgttcctt-tgttttagtatgtggtaggaacacaagatgtgcaatccatcaacagttggcttatgtaatgattaaa---
| | |||||| |||      ||||  | || || |||||  ||     ||  | ||      |  ||  | || ||  |||||||||||||||||||||||||||   ||| || | |           | ||  |   || | ||||| ||| | |   |  |    |   ||   ||  ||      | |  | |  |||    |||   
GAAGGCAGGATCAACAGAAAACAAAGTTAGTCAATAGAGGTCGCATTGATGGAGTGACCTCCCAACTAACCCAAAAGTTGGATCCCATAGACTGGCTTACgtaagaaatcttatccctaatctttacctacgtcatatattatcttttactattttggctgctctatcgtcttgttgtcactctgattctagtattttgaatatcaaaaaag

upper sequence: GLYMA20G32980.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0340g00080.t01 (Vitis vinifera), 5'ss of exon 3
GGAAGCAGGACCAAAGTTTGACAACCTCAGCCATTAGAGAACGTTCAAATCAATTGTTAAATCGTCTTTCTCAGAAACTGGATCCCATAGACTGGCTTACgtaagtctcattcttccgatcaagttgttcctttgttttagtatgtggtaggaacacaagatgtgcaatcc-atcaacagttggcttatgtaat--gattaaa
||||||||||  |||    ||| |  |||  ||||||||| ||     ||   ||| |||||||| |||| || | | ||||||||||||||||||||||||||||    || |     |    ||  |     |||| |   | ||  ||    |    || |  | |   ||  | | |   | | |||  |   |||   
GGAAGCAGGATAAAAAACAGACCAAGTCAATCATTAGAGAGCGAGTTGATGGGTTGGTAAATCGTTTTTCACAAAGAATGGATCCCATAGACTGGCTTACgtaagttc--ttttatgagtattcttcattaaaagtttgaagttttgaaagtcttattttatttttatttttatttatactgttcctgtgtttttaaatttg-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26045771|gb|CA783256.1|CA783256
EST:     CAATTGTTAAATCGTCTTTCTCAGAAACTGGATCCCATAGACTGGCTTAC                         GTATGAGCCATATCTCTGGGA
genomic: CAATTGTTAAATCGTCTTTCTCAGAAACTGGATCCCATAGACTGGCTTACgtaagtctca ... tatgttaaagGTATGAGCCATATCTCTGGGA
EST: gi|14990829|gb|BI316502.1|BI316502
EST:     CAATTGTTAAATCGTCTTTCTCAGAAACTGGATCCCATAGACTGGCTTAC                         GTATGAGCCATATCTCTGGGAGAATGAGAGACAGTCTTACCTACGACATGC
genomic: CAATTGTTAAATCGTCTTTCTCAGAAACTGGATCCCATAGACTGGCTTACgtaagtctca ... tatgttaaagGTATGAGCCATATCTCTGGGAGAATGAGAGACAGTCTTACCTACGACATGC