1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcaattttgctaggaaacctactaatgtacattctgaagctagtgattgatactctaaatgtcatgtcttatttacaaacttacctcttggtgaatccagTGCTCCAGCATTGTCCTCTAGAGGGACAAAGAAGGCCTTTACTCCATCATCAAGTGAAATCTCTTCAAGAAGTTCGTGGAATTCAATTACAAATGGAGAA
species | Glycine max |
transcript | GLYMA20G32980.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATATTCTGAGGTGTTCTACAGTTCCCCGATTTAAATACCTCCCCATCAG TGCTCCAGCATTGTCCTCTAGAGGGACAAAGAEST: gi|15661573|gb|BI698944.1|BI698944
genomic: AATATTCTGAGGTGTTCTACAGTTCCCCGGTTTAAATACCTCCCCATCAGgttagtcaca ... gtgaatccagTGCTCCAGCATTGTCCTCTAGAGGGACAAAGA
EST: AATATTCTGAGGTGTTCTACAGTTCCCCGGTTTAAATACCTCCCCATCAG TGCTCCAGCATTGTCCTCTAGAGGGACAAAGAAGGCCTTTACTCCATCATC
genomic: AATATTCTGAGGTGTTCTACAGTTCCCCGGTTTAAATACCTCCCCATCAGgttagtcaca ... gtgaatccagTGCTCCAGCATTGTCCTCTAGAGGGACAAAGAAGGCCTTTACTCCATCATC
attgatactctaaatgtcatgtcttatttacaaacttacctcttggtgaatccagTGCTCCAGCATTGTCCTCTAGAGGGACAAAGAAGGCCTTTACTCCATCATCAAGTGAAATCTCTTCAAGAAGTTCGTGGAATTCAATTACAAATGGAGAA
aacttac putative branch site (score: 2)
ttatttacaaactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaattttgctaggaaacctactaatgtacattctgaagctagtgattgatactctaaatgtcatgtcttatttacaaacttacctcttggtgaatccagTGCTCCAGCATTGTCCTCTAGAGGGACAAAGAAGGCCTTTACTCCATCATCAAGTGAAATCTCTTCAAGAAGTTCGTGGAATTCAATTACAAATGGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - ttgctag
- - - - - - - - - - - -aatgtac
- - - - - - - - - - - - - - - - -ctgaagc
- - - - - - - - - - - - - - - - - - - - - gtgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtc