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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGTATGTACACAGATACTGTTCAGAAACTGCCTACTAATTCAGAATCTAATATTCTGAGGTGTTCTACAGTTCCCCGGTTTAAATACCTCCCCATCAGgttagtcacatcttgtattttatttgttttgtctgtcatttcatattcataatgcatggttctgtgtttttttcttttaccattattctatgtatttaat...

Basic information

species Glycine max
transcript GLYMA20G32980.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32980.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0340g00080.t01 (Vitis vinifera), 5'ss of exon 4
ACCGTATGTACACAGATACTGTTCAGAAACTGCCTACTAATTCAGAATCTAATATTCTGAGGTGTTCTACAGTTCCCCGGTTTAAATACCTCCCCATCAGgttagtcacatcttgtattttatttgttttgtctgtcatttcatattcataatgcat-ggttctgtgtttttttcttttaccattattctatgtatttaat---
| || ||||| || |||||||| |||||| ||||||||||||||||||| |||||  |||| || || |||||||| || || ||||| || ||||||||||  |     | ||| |||| |   |||| |    |    | | |  ||  |  | | ||     || ||   ||  ||     |    | |||    |     
ATCGGATGTATACCGATACTGTGCAGAAAGTGCCTACTAATTCAGAATCAAATATAATGAGATGCTCCACAGTTCCTCGCTTCAAATATCTTCCCATCAGgtatgat---tattgcattt-agaagtttggggaattcaattagaggcaagacactttggcaaattgcttgcctcactttgttgtggattgtgtgacaagagag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14990829|gb|BI316502.1|BI316502
EST:     AATATTCTGAGGTGTTCTACAGTTCCCCGATTTAAATACCTCCCCATCAG                         TGCTCCAGCATTGTCCTCTAGAGGGACAAAGA
genomic: AATATTCTGAGGTGTTCTACAGTTCCCCGGTTTAAATACCTCCCCATCAGgttagtcaca ... gtgaatccagTGCTCCAGCATTGTCCTCTAGAGGGACAAAGA
EST: gi|15661573|gb|BI698944.1|BI698944
EST:     AATATTCTGAGGTGTTCTACAGTTCCCCGGTTTAAATACCTCCCCATCAG                         TGCTCCAGCATTGTCCTCTAGAGGGACAAAGAAGGCCTTTACTCCATCATC
genomic: AATATTCTGAGGTGTTCTACAGTTCCCCGGTTTAAATACCTCCCCATCAGgttagtcaca ... gtgaatccagTGCTCCAGCATTGTCCTCTAGAGGGACAAAGAAGGCCTTTACTCCATCATC