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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATGACATGGGATGTGGATCAACCATAGGCCCAATACTTGCTTCTGGAGTTGGCATCCGAACAGTTGACTGTGGAATTGCTCAACTTTCAATGCACAGgtataaaatgatgtttgcattaacactttgtttaaagagaaattaaaataaagccttgataccaaaaaggttaacaagatagggtttgttagtatgttta...

Basic information

species Glycine max
transcript GLYMA20G32790.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32790.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g73680.1 (Oryza sativa), 5'ss of exon 8
GAAATGACATGGGATGTGGATCAACCATAGGCCCAATACTTGCTTCTGGAGTTGGCATCCGAACAGTTGACTGTGGAATTGCTCAACTTTCAATGCACAGgtataaaatgatgtttgcattaacactttgtttaaagag--aaattaaaataaagccttgataccaaaaaggttaacaagatagggtttgttagtatgttta-
| ||||| ||||| ||||| ||||| || ||||| |||||||||||||| |||||||| || || ||||||||||| ||| |||| || |||||||||||||||  |  | ||   || ||| | |||| ||| |  |    |        |||  |||  | | |||          | | |   ||       |  |    
GGAATGATATGGGCTGTGGTTCAACTATTGGCCCCATACTTGCTTCTGGTGTTGGCATACGGACTGTTGACTGTGGTATTCCTCAGCTCTCAATGCACAGgtatgcacagttg---gctttatccctttttttgacaaattgacccttttcaaaaacttatttcgaaactaacccctgacaaaaacttcaaccaaaaataggt

upper sequence: GLYMA20G32790.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G061127_T01 (Zea mays), 5'ss of exon 4
GAAATGACATGGGATGTGGATCAACCATAGGCCCAATACTTGCTTCTGGAGTTGGCATCCGAACAGTTGACTGTGGAATTGCTCAACTTTCAATGCACAGgtataaaatgatgtttgcattaacactttgtttaaagagaaattaaaataaagccttgataccaaaaaggttaacaagatagggtttgttagtatgttta-----
| ||||| ||||||||||| || || || || || |||||||||||||| |||||||| || || || |||||||| ||  |||| ||||| |||||||||||| |             |||||| ||  |  ||| ||   ||    |  |    |  |   | |||  ||  |||  ||   ||| |  |||    ||     
GGAATGATATGGGATGTGGCTCCACTATTGGACCCATACTTGCTTCTGGTGTTGGCATACGGACTGTAGACTGTGGTATCCCTCAGCTTTCGATGCACAGgtattattgcccagcccatttaacatttcatagaaacagttctt----tgcaattgtatttgtagaaaacttctcaat-tataatttatatgtacacatataaat

upper sequence: GLYMA20G32790.2 (Glycine max), 5'ss of exon 6
lower sequence: AT5G04710.1 (Arabidopsis thaliana), 5'ss of exon 8
GAAATGACATGGGATGTGGATCAACCATAGGCCCAATACTTGCTTCTGGAGTTGGCATCCGAACAGTTGACTGTGGAATTGCTCAACTTTCAATGCACAGgtata--aaatgatgtt-tgcattaacactttgtttaaagagaaattaaaataaagccttgataccaaaaaggttaacaagatagggtttgttagtatgttta----
|||| || ||||||||||| ||||| ||||| || ||| | ||||| ||||| || |||||||| ||||| ||||| || ||||| ||||| ||||| ||||||   || |  ||   | | ||| ||  |  ||   |      |  |||| ||    || ||     |   |        | |   | |||| | |||       
GAAACGATATGGGATGTGGTTCAACAATAGGACCTATATTGGCTTCAGGAGTAGGGATCCGAACCGTTGATTGTGGCATAGCTCAGCTTTCTATGCATAGgtatgttaactactgccattccttagcaactctttctcatgtt--tccaaatcaaaatatgttagactcagcttctggtttttggaactcgttact-tgtgagacag

upper sequence: GLYMA20G32790.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0106g00700.t01 (Vitis vinifera), 5'ss of exon 9
GAAATGACATGGGATGTGGATCAACCATAGGCCCAATACTTGCTTCTGGAGTTGGCATCCGAACAGTTGACTGTGGAATTGCTCAACTTTCAATGCACAGgtataaaa-tgatgtttgcattaac----actttgtttaaagagaaattaaaataaagccttgataccaaaaaggt---taacaagatagggtttgttagtatgttta
|||| || |||||||||||||| |||||||| || ||||| |||||||| ||||||||||| || ||||| ||||| |||||||| || || |||||||||||| | | | || ||    ||  |    || ||  ||     |   | | |   |  |    | |  |||   ||    |||||| ||   |   ||||||      
GAAACGATATGGGATGTGGATCTACCATAGGTCCCATACTAGCTTCTGGGGTTGGCATCCGCACTGTTGATTGTGGTATTGCTCAGCTCTCCATGCACAGgtatcatacttattttgatcttggctcatacattcatttccctggtgtaacatctagtctcccacaataaagctgtattcaacaaggtac--tccattagta------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16347296|gb|BI972891.1|BI972891
EST:     GTTGGCATCCGAACAGCTGACTGTGGAATTGCTCAACTTTCAATGCACAG                         TATAAGGGAAATATGTGGGAAGGAAGATATAGACATTGCTTACAAGCATGT
genomic: GTTGGCATCCGAACAGTTGACTGTGGAATTGCTCAACTTTCAATGCACAGgtataaaatg ... tggattgcagTATAAGGGAAATATGTGGGAAGGAAGATATAGACATTGCTTACAAGCATTT
EST: gi|14258779|gb|BG881687.1|BG881687
EST:     GTTGGCATCCGAACAGTTGACTGTGGAATTGCTCAACTTTCAATGCACAG                         TATAAGGGAAATATGTGGGAAGGAAGATATAGACATTGCTTACAAGCATTT
genomic: GTTGGCATCCGAACAGTTGACTGTGGAATTGCTCAACTTTCAATGCACAGgtataaaatg ... tggattgcagTATAAGGGAAATATGTGGGAAGGAAGATATAGACATTGCTTACAAGCATTT
EST: gi|6718964|gb|AW306611.1|AW306611
EST:     GAACAGTTGACTGTGGAATTGCTCAACTTTCAATGCACAG                         TATAAGGGAAATATGTGGGAAGGAAGATATAGACATTGCTTACAAGCATTT
genomic: GAACAGTTGACTGTGGAATTGCTCAACTTTCAATGCACAGgtataaaatg ... tggattgcagTATAAGGGAAATATGTGGGAAGGAAGATATAGACATTGCTTACAAGCATTT
EST: gi|10232725|gb|BE801613.1|BE801613
EST:     GTTGGCATCCGAACAGTTGACTGTGGAATTGCTCAACTTTCAATGCACAG                         TATAAGGGAAATATGTGGGAAGG
genomic: GTTGGCATCCGAACAGTTGACTGTGGAATTGCTCAACTTTCAATGCACAGgtataaaatg ... tggattgcagTATAAGGGAAATATGTGGGAAGG