1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATTGGTTATTAAGCACAATGCAAACCAGCGATATGCTACTAGTGGAATCACATCTTTTCTTTTTAAAGAAGTTGGAAAAATCCATAACCTTCCAACTCAGgtagttcttctttatggttgcatttgtttatacacatgtatgtatatctatttatgaagtatgaagtgcgaattatttgattgcaagttatttgattgac...
species | Glycine max |
transcript | GLYMA20G32790.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CATCTTTTCTTTTTAAAGAAGTTGGAAAAATCCATAACCTTCCAACTCAG GAATTTGCGGTTAGAAATGACATGGGATGTGGATCAACCATAGGCCCAATAEST: gi|151401885|gb|EV271698.1|EV271698
genomic: CATCTTTTCTTTTTAAAGAAGTTGGAAAAATCCATAACCTTCCAACTCAGgtagttcttc ... caaactgaagGAATTTGCGGTTAGAAATGACATGGGATGTGGATCAACCATAGGCCCAATA
EST: CATCTTTTCTTTTTAAAGAAGTTGGAAAAATCCATAACCTTCCAACTCAG -AATTTGCGGTTAGAA-TGACATGGGATGTGGATCAACCATAG-CCCAATAEST: gi|14258779|gb|BG881687.1|BG881687
genomic: CATCTTTTCTTTTTAAAGAAGTTGGAAAAATCCATAACCTTCCAACTCAGgtagttcttc ... caaactgaagGAATTTGCGGTTAGAAATGACATGGGATGTGGATCAACCATAGGCCCAATA
EST: CATCTTTTCTTTTTAAAGAAGTTGGAAAAATCCATAACCTTCCAACTCAG GAATTTGCGGTTAGAAATGACATGGGATGTGGATCAACCATAGGCCCAATAEST: gi|10232725|gb|BE801613.1|BE801613
genomic: CATCTTTTCTTTTTAAAGAAGTTGGAAAAATCCATAACCTTCCAACTCAGgtagttcttc ... caaactgaagGAATTTGCGGTTAGAAATGACATGGGATGTGGATCAACCATAGGCCCAATA
EST: CATCTTTTCTTTTTAAAGAAGTTGGAAAAATCCATAACCTTCCAACTCAG GAATTTGCGGTTAGAAATGACATGGGATGTGGATCAACCATAGGCCCAATA
genomic: CATCTTTTCTTTTTAAAGAAGTTGGAAAAATCCATAACCTTCCAACTCAGgtagttcttc ... caaactgaagGAATTTGCGGTTAGAAATGACATGGGATGTGGATCAACCATAGGCCCAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGGTTATTAAGCACAATGCAAACCAGCGATATGCTACTAGTGGAATCACATCTTTTCTTTTTAAAGAAGTTGGAAAAATCCATAACCTTCCAACTCAGgtagttcttctttatggttgcatttgtttatacacatgtatgtatatctatttatgaagtatgaagtgcgaattatttgattgcaagttatttgattgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT