Sequence
atgc intronic sequence ATGC exonic sequenceTTATTGTGCATTAAGGGCACTTATTGACTCATGTCAATCTCCTGGTGACTTAGCAAGTGAAAGTGCAATTCGAATGGTTGCTTTATTTGACAATGAAGAGgtatttctttatcttgcttaatttgtgtgcttaatgttttatttatagatgtcagattttgttccatttttgcttgccaacaaataattatgtgtttgta...
Basic information
species | Glycine max |
transcript | GLYMA20G32790.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G32790.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g73680.1 (Oryza sativa), 5'ss of exon 5
TTATTGTGCATTAAGGGCACTTATTGACTCATGTCAATCTCCTGGTGACTTAGCAAGTGAAAGTGCAATTCGAATGGTTGCTTTATTTGACAATGAAGAGgtatttctttatcttgcttaatttgtgtgcttaatgttttatttatagatgtcagattttgttccatttttgcttgc-caacaaataattatgtgtttgta---
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TTATTGTGCTCTTAGATCTCTCATGGACTCCTCCAAGATGCCAGAAGAATTGTCAAATGAGAAGGCTATAAGAATGATTGCTTTATTTGATAATGAAGAGgtatg-ctatatctaatgaagtctcac--ctgattgctaaaagtatc-atgattgataaaagcacatcaatgcgtgctcaagatttccattcccgtttggagtc
upper sequence: GLYMA20G32790.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0106g00700.t01 (Vitis vinifera), 5'ss of exon 6
TTATTGTGCATTAAGGGCACTTATTGACTCATGTCAATCTCCTGGTGACTTAGCAAGTGAAAGTGCAATTCGAATGGTTGCTTTATTTGACAATGAAGAGgtatttctttatcttgcttaatttgtgtgctta---atgttttatttatagatgtcagattttgttccatttttgcttgccaacaaataattatgtgtttgta
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TTACTGTGCGTTGAGAGCACTTATTGATTCATGTCAATCAACTGGGGATTTGTCAAGTGAACATGCCATTCGGATGGTTGCATTATTTGATAATGAAGAGgtaagttttt--cttgagcaactttcagccttatataagatggctttatttctcccgtgtctggagatatatatacacatta-tatttcgtaaggtatggataMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151401885|gb|EV271698.1|EV271698EST: TAGCAAGTGAAAGTGCAATTCGAATGGTTGCTTTATTTGACAATGAAGAG GTGGGTTCAGGTTCTGTTCAAGGAGCTGGAGCACCCACCATGTTTCAGGCC
genomic: TAGCAAGTGAAAGTGCAATTCGAATGGTTGCTTTATTTGACAATGAAGAGgtatttcttt ... tgctatttagGTGGGTTCAGGTTCTGTTCAAGGAGCTGGAGCACCCACCATGTTTCAGGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTATTGTGCATTAAGGGCACTTATTGACTCATGTCAATCTCCTGGTGACTTAGCAAGTGAAAGTGCAATTCGAATGGTTGCTTTATTTGACAATGAAGAGgtatttctttatcttgcttaatttgtgtgcttaatgttttatttatagatgtcagattttgttccatttttgcttgccaacaaataattatgtgtttgta
- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA