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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCACCATGTTTCAGGCCATGAGACGTATAGTTGGTGACTTAGCAAATAACTATGTTAGTGAAGGCTCTTTTGAGCGCACTATTCGCCAATCATTTCTTGgtatatcatccacttatcacccttctaaagtaaatttgaggcaaatgatacccaagggttgataccatcagcttgattataatattgtggattgtttgca...

Basic information

species Glycine max
transcript GLYMA20G32790.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32790.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0106g00700.t01 (Vitis vinifera), 5'ss of exon 7
CCCACCATGTTTCAGGCCATGAGACGTATAGTTGGTGACTTAGCAAATAACTATGTTAGTGAAGGCTCTTTTGAGCGCACTATTCGCCAATCATTTCTTGgtatatcatccacttatcacccttctaaagtaaatttgaggcaaatgatacccaagggttgataccatcagcttgattataatatt-gtggattgtttgca---------
|| |||||||||||||| |||||||||||| || ||  |||||   || | |||||| |||| ||  ||||||||||  | ||||| ||||| |||||||||||    |  | |||  | | ||      |||| ||  |   ||  | |       ||  | | ||||  |||  | ||| | || ||  |||  |   |         
CCAACCATGTTTCAGGCTATGAGACGTATAATTAGTTGCTTAGTTCATGAGTATGTTGGTGAGGGTGCTTTTGAGCGAGCGATTCGTCAATCTTTTCTTGgtatgc--ttgagttagaatcttt------taaagtttggcttaaccagatttgttagt--aaatcatcttcttcttcatattttttgtccatttatcttagagaaagtc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401885|gb|EV271698.1|EV271698
EST:     CTATGTTAGTGAAGGCTCTTTTGAGCGCACTATTCGCCAATCATTTCTTG                         TGTCTGCTGATATGGCCCATGGAGTTCATCCAAATTTTATGGATAAGCATG
genomic: CTATGTTAGTGAAGGCTCTTTTGAGCGCACTATTCGCCAATCATTTCTTGgtatatcatc ... ttctttacagTGTCTGCTGATATGGCCCATGGAGTTCATCCAAATTTTATGGATAAGCATG
EST: gi|10232725|gb|BE801613.1|BE801613
EST:     CTATGTTAGTGAAGGCTCTTTTGAGCGCACTATTCGCCAATCATTTCTTG                         TGTCTGCTGATATGGCCCATGGAGTTCATCCAAATTTTATGGATAAGCATG
genomic: CTATGTTAGTGAAGGCTCTTTTGAGCGCACTATTCGCCAATCATTTCTTGgtatatcatc ... ttctttacagTGTCTGCTGATATGGCCCATGGAGTTCATCCAAATTTTATGGATAAGCATG