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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGACTTTCTTTTTGAGTCTCCAGATGGCAGAAGATACCTCAATTTTACTTTTGGTTGCCCTCTTGTTGAGACAGTGGTTGACAAGTTGATTGTAAAAgtgggtttgttattattaactgaaaattgtgctccattgtttcaactgcttctgtatgcaatagtggaggtttaatttacccttcttgttgaaccattaaatttcag

Basic information

species Glycine max
transcript GLYMA20G32070.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32070.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0019g04410.t01 (Vitis vinifera), 5'ss of exon 5
GCAAGACTTTCTTTTTGAGTCTCCAGATGGCAGAAGATACCTCAATTTTACTTTTGGTTGCCCTCTTGTTGAGACAGTGGTTGACAAGTTGATTGTAAAAgtgggtttgttattattaa-ctgaaaattgtgctccattgtttcaactgcttctgtatgcaatagtggaggtttaatttacccttcttgttgaaccattaaatttcag
| ||||||| |||||||||||  | || |||||  | |||||||| |||||||||||||| || ||||| ||||| || |||||||||||||  || ||||| ||| |   | |||||  ||||    | || |  ||| ||| |  |     |   |         | | | | || ||   || |   | |               
GGAAGACTTCCTTTTTGAGTCATCTGACGGCAGGCGCTACCTCAACTTTACTTTTGGTTGTCCACTTGTGGAGACCGTAGTTGACAAGTTGACAGTCAAAgtaggtctagcactattattctgattcatatggta-attatttgatttctccttactttttgcttcagtgatctcatctaagattttgtctcag--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192309535|gb|FK000197.1|FK000197
EST:     CTTTTGGTTGCCCTCTTGTTGAGACAGTGGTTGACAAGTTGATTGTAAAA                         GTTGTGCTGCCAGAGGGATCCAAAGATCCCACTGTTGAGATTCCTTTT
genomic: CTTTTGGTTGCCCTCTTGTTGAGACAGTGGTTGACAAGTTGATTGTAAAAgtgggtttgt ... taaatttcagGTTGTGCTGCCAGAGGGATCCAAAGATCCCACTGTTGAGATTCCTTTT