1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttgaaattatttgtttttatttctttccaatggattgtgctattatagcatcatttacgaaatttgcagatcttatatttcaaagagctgtcctttcagGTTGAAAATTTGGGGACATCTCCTACTTCAGAAGTACATATTGCCTTTTCACCCACTGAAGTAGAACATCTAGCAATAGTCAGAGCTGCTGCAACTTCTG
species | Glycine max |
transcript | GLYMA20G32070.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTGACTTGACTTCTCACATTATTAAGGTGTACTTGACGTTGAAG GTTGAAAATTTGGGGTCATCTCCTACTTCAGAAGTACATATTGCCTTTTCAEST: gi|254344583|gb|GR855454.1|GR855454
genomic: ATTGACTTGACTTCTCACATTATTAAGGTGTACTTGACGTTGAAGgtaacctctc ... gtcctttcagGTTGAAAATTTGGGGACATCTCCTACTTCAGAAGTACATATTGCCTTTTCA
EST: ATTGACTTGACTTCTCACATTATTAAGGTGTACTTGACGTTGAAG GTTGAAAATTTGGGGACATCTCCTACTTCAGAAGTACATATTGCCTTTTCAEST: gi|209706299|gb|BW668098.1|BW668098
genomic: ATTGACTTGACTTCTCACATTATTAAGGTGTACTTGACGTTGAAGgtaacctctc ... gtcctttcagGTTGAAAATTTGGGGACATCTCCTACTTCAGAAGTACATATTGCCTTTTCA
EST: ATTGACTTGACTTCTCACATTATTAAGGTGTACTTGACGTTGAAG GTTGAAAATTTGGGGTCATCTCCTACTTCAGAAGTACATATTGCCTTTTCAEST: gi|8827661|gb|BE211391.1|BE211391
genomic: ATTGACTTGACTTCTCACATTATTAAGGTGTACTTGACGTTGAAGgtaacctctc ... gtcctttcagGTTGAAAATTTGGGGACATCTCCTACTTCAGAAGTACATATTGCCTTTTCA
EST: ATTGACTTGACTTCTCACATTATTAAGGTGTACTTGACGTTGAAG GTTGAAAATTTGGGGTCATCTCCTACTTCAGAAGTACATATTGCCTTTTCAEST: gi|22523994|gb|BU082805.1|BU082805
genomic: ATTGACTTGACTTCTCACATTATTAAGGTGTACTTGACGTTGAAGgtaacctctc ... gtcctttcagGTTGAAAATTTGGGGACATCTCCTACTTCAGAAGTACATATTGCCTTTTCA
EST: ATTGACTTGACTTCTCACATTATTAAGGTGTACTTGACGTTGAAG GTTGAAAATTTGGGGACATCTCCTACTTCAGAAGTACATATTGCCTTTTCAEST: gi|7685301|gb|AW755949.1|AW755949
genomic: ATTGACTTGACTTCTCACATTATTAAGGTGTACTTGACGTTGAAGgtaacctctc ... gtcctttcagGTTGAAAATTTGGGGACATCTCCTACTTCAGAAGTACATATTGCCTTTTCA
EST: ATTGACTTGACTTCTCACATTATTAAGGTGTACTTGACGTTGAAG GTTGAAAATTTGGGGACATCTCCTACTTCAGAAGTACATATTGCCTTTTCAEST: gi|14259020|gb|BG881928.1|BG881928
genomic: ATTGACTTGACTTCTCACATTATTAAGGTGTACTTGACGTTGAAGgtaacctctc ... gtcctttcagGTTGAAAATTTGGGGACATCTCCTACTTCAGAAGTACATATTGCCTTTTCA
EST: TCTCACATTATTAAGGTGTACTTGACGTTGAAG GTTGAAAATTTGGGGACATCTCCTACTTCAGAAGTACATATTGCCTTTTCAEST: gi|27424909|gb|CA936429.1|CA936429
genomic: TCTCACATTATTAAGGTGTACTTGACGTTGAAGgtaacctctc ... gtcctttcagGTTGAAAATTTGGGGACATCTCCTACTTCAGAAGTACATATTGCCTTTTCA
EST: ATTGACTTGACTTCTCACATTATTAAGGTGTACTTGACGTTGAAG GTTGAAAATTTGGGGACATCTCCTACTTCAGAAGTACATATTGCCTTTTCAEST: gi|209719454|gb|BW669142.1|BW669142
genomic: ATTGACTTGACTTCTCACATTATTAAGGTGTACTTGACGTTGAAGgtaacctctc ... gtcctttcagGTTGAAAATTTGGGGACATCTCCTACTTCAGAAGTACATATTGCCTTTTCA
EST: ATTGACTTGACTTCTCACATTATTAAGGTGTACTTGACGTTGAAG GTTGAAAATTTGGGGTCATCTCCTACTTCAGAAGTACATATTGCCTTTTCA
genomic: ATTGACTTGACTTCTCACATTATTAAGGTGTACTTGACGTTGAAGgtaacctctc ... gtcctttcagGTTGAAAATTTGGGGACATCTCCTACTTCAGAAGTACATATTGCCTTTTCA
atagcatcatttacgaaatttgcagatcttatatttcaaagagctgtcctttcagGTTGAAAATTTGGGGACATCTCCTACTTCAGAAGTACATATTGCCTTTTCACCCACTGAAGTAGAACATCTAGCAATAGTCAGAGCTGCTGCAACTTCTG
ctgtcctttc CT-rich tract
atcttatatttcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgaaattatttgtttttatttctttccaatggattgtgctattatagcatcatttacgaaatttgcagatcttatatttcaaagagctgtcctttcagGTTGAAAATTTGGGGACATCTCCTACTTCAGAAGTACATATTGCCTTTTCACCCACTGAAGTAGAACATCTAGCAATAGTCAGAGCTGCTGCAACTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - -ctttcca
- - - - - - - - - - - - - - - - -gattgtg