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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAACGGGAAATTGAAATATCTCACTGGGGAAGCGTTCAAGTCACTGAGCGATATAGCTTGGTCCATGCTGGTGCTCGACATAAAGGTGTTTTTTCAAGgtatatttgttatctcctttttattttacttgatgcttcagatcctcatttagttctttgggaaatatcatatgtaactattaaagtttaaaaggaatag...

Basic information

species Glycine max
transcript GLYMA20G32070.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254344583|gb|GR855454.1|GR855454
EST:     CGATATAGCTTGGTCCATGCTGGTGCTCGACATAAAGGTGTTTTTTCAAG                         GGTTGAATATCAAACTAAACCAG
genomic: CGATATAGCTTGGTCCATGCTGGTGCTCGACATAAAGGTGTTTTTTCAAGgtatatttgt ... ccattggcagGGTTGAATATCAAACTAAACCAG
EST: gi|6952131|gb|AW424199.1|AW424199
EST:     CGATATAGCTTGGTCCATGCTGGTGCTCGACATAAAGGTGTTTTTTCAAG                         GGTTGAATATCAAACTAAACCAGGTGGTACTGGTGTCTCTTCATTTAAACA
genomic: CGATATAGCTTGGTCCATGCTGGTGCTCGACATAAAGGTGTTTTTTCAAGgtatatttgt ... ccattggcagGGTTGAATATCAAACTAAACCAGGTGGTACTGGTGTCTCTTCATTTAAACA
EST: gi|21889720|gb|BQ742941.1|BQ742941
EST:     GATATAGCTTGGTCCATGCTGGTGCTCGACATAAAGGTGNNNNNNNCAAG                         GGTTGAATATCAAACTAAACCAGGTGGTACTGGTGTCTCTTCATTTAAAC
genomic: GATATAGCTTGGTCCATGCTGGTGCTCGACATAAAGGTGTTTTTT-CAAGgtatatttgt ... ccattggcagGGTTGAATATCAAACTAAACCAGGTGGTACTGGTGTCTCTTCATTTAAAC
EST: gi|192309535|gb|FK000197.1|FK000197
EST:     CGATATAGCTTGGTCCATGCTGGTGCTCGACATAAAGGTGTTTTTTCAAG                         GGTTGAATATCAAACTAAACCAGGTGGTACTGGTGTCTCTTCATTTAAACA
genomic: CGATATAGCTTGGTCCATGCTGGTGCTCGACATAAAGGTGTTTTTTCAAGgtatatttgt ... ccattggcagGGTTGAATATCAAACTAAACCAGGTGGTACTGGTGTCTCTTCATTTAAACA
EST: gi|12773288|gb|BG238215.1|BG238215
EST:     CGATATAGCTTGGTCCATGCTGGTGCTCGACATAAAGGTGTTTTTTCAAG                         GGTTGAATATCAAACTTAACCAGGGGGTACTGGTGGTCTCT-CATTGAAAC
genomic: CGATATAGCTTGGTCCATGCTGGTGCTCGACATAAAGGTGTTTTTTCAAGgtatatttgt ... ccattggcagGGTTGAATATCAAACTAAACCAGGTGGTACTGGTG-TCTCTTCATTTAAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAGAACGGGAAATTGAAATATCTCACTGGGGAAGCGTTCAAGTCACTGAGCGATATAGCTTGGTCCATGCTGGTGCTCGACATAAAGGTGTTTTTTCAAGgtatatttgttatctcctttttattttacttgatgcttcagatcctcatttagttctttgggaaatatcatatgtaactattaaagtttaaaaggaatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaggaa