1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gagatcacaaaggagtttagtgttgaatgacaaagatagtttttgttttaaaatgtcatgttttctggttcagacttatttacatgtttattgattgcagTCAGAACTTGAAATTGAACCTCGGTATCCTCTATTTGGAGGCTGGAAATCAACCTTTGTCATTGGTTATGGGCTACCATTGCAAGACTTTCTTTTTGAGT
species | Glycine max |
transcript | GLYMA20G32070.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGAATAGGANATATNTCGTCGTCACATCTACGTACAGATTCTTTGGA-G TCAGAACTTGAAAATGAAEST: gi|192309535|gb|FK000197.1|FK000197
genomic: TGGAATAGGAAATATTTCGTCGTCACATCTACGTACAGATTCTT-GGAAGgtaatacatg ... ttgattgcagTCAGAACTTGAAATTGAA
EST: ATGGAATAGGAAATATTTCGTCGTCACATCTACGTACAGATTCTTGGAAG TCAGAACTTGAAATTGAACCTCGGTATCCTCTATTTGGAGGCTGGAAATCA
genomic: ATGGAATAGGAAATATTTCGTCGTCACATCTACGTACAGATTCTTGGAAGgtaatacatg ... ttgattgcagTCAGAACTTGAAATTGAACCTCGGTATCCTCTATTTGGAGGCTGGAAATCA
ttttaaaatgtcatgttttctggttcagacttatttacatgtttattgattgcagTCAGAACTTGAAATTGAACCTCGGTATCCTCTATTTGGAGGCTGGAAATCAACCTTTGTCATTGGTTATGGGCTACCATTGCAAGACTTTCTTTTTGAGT
tattgat putative branch site (score: 3)
ttatttacatgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagatcacaaaggagtttagtgttgaatgacaaagatagtttttgttttaaaatgtcatgttttctggttcagacttatttacatgtttattgattgcagTCAGAACTTGAAATTGAACCTCGGTATCCTCTATTTGGAGGCTGGAAATCAACCTTTGTCATTGGTTATGGGCTACCATTGCAAGACTTTCTTTTTGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - -tgaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacatgt