1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGAGTATGCAGAGAAGATGATATCTGCAATTGATGCTGTGCGAGTGAGAGGTGATTCTGTTGGTGGTGTTGTGACATGCATTGTGAGGAACTGTCCACGAgtaagtctttccatatgcctctattaagcacaaataattgggcaagatagcaagtagagtttaggtttcaaattaaattataaaagtgataacaactgca...
species | Glycine max |
transcript | GLYMA20G31980.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTGATTCTGTGGGTGGTGTTGTGACATGCATTGTGAGGAACTGTCCACGA GGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAGCTGGCTAAAGCTEST: gi|23052733|gb|BU577224.1|BU577224
genomic: GTGATTCTGTTGGTGGTGTTGTGACATGCATTGTGAGGAACTGTCCACGAgtaagtcttt ... tatttctcagGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAGCTGGCTAAAGCT
EST: GTGATTCTGTTGGTGGTGTTGTGACATGCATTGTGAGGAACTGTCCACGA GGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAGCTGGCTAAAGCTEST: gi|16346555|gb|BI972150.1|BI972150
genomic: GTGATTCTGTTGGTGGTGTTGTGACATGCATTGTGAGGAACTGTCCACGAgtaagtcttt ... tatttctcagGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAGCTGGCTAAAGCT
EST: GTGATTCTGTTGGTGGTGTTGTGACATGCATTGTGAGGAACTGTCCACGA GGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAGCTGGCTAAAGCTEST: gi|120533980|gb|EH262113.1|EH262113
genomic: GTGATTCTGTTGGTGGTGTTGTGACATGCATTGTGAGGAACTGTCCACGAgtaagtcttt ... tatttctcagGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAGCTGGCTAAAGCT
EST: GTGATTCTGTTGGTGGTGTTGTGACATGCATTGTGAGGAACTGTCCACGA GGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAGCTGGCTAAAGCTEST: gi|19934393|gb|BQ079423.1|BQ079423
genomic: GTGATTCTGTTGGTGGTGTTGTGACATGCATTGTGAGGAACTGTCCACGAgtaagtcttt ... tatttctcagGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAGCTGGCTAAAGCT
EST: GTGATTCTGTTGGTGGTGTTGTGACATGCATTGTGAGGAACTGTCCACGA GGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAGCTGGCTAAAGCTEST: gi|254340228|gb|GR858353.1|GR858353
genomic: GTGATTCTGTTGGTGGTGTTGTGACATGCATTGTGAGGAACTGTCCACGAgtaagtcttt ... tatttctcagGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAGCTGGCTAAAGCT
EST: -TGATTCTGTTGGTGGTGTTGTGACATGCATTGTGAGGAACTGTCCACGA G-TCTCGGTTCAC
genomic: GTGATTCTGTTGGTGGTGTTGTGACATGCATTGTGAGGAACTGTCCACGAgtaagtcttt ... tatttctcagGGTCTCGGTTCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGTATGCAGAGAAGATGATATCTGCAATTGATGCTGTGCGAGTGAGAGGTGATTCTGTTGGTGGTGTTGTGACATGCATTGTGAGGAACTGTCCACGAgtaagtctttccatatgcctctattaagcacaaataattgggcaagatagcaagtagagtttaggtttcaaattaaattataaaagtgataacaactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattaaa