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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtcttaatctcttctctttctgtcttcatcactatctcattcactcagcacacacagatactagccactcagatatgtcaagaggggtttttgtat...

Basic information

species Glycine max
transcript GLYMA20G31980.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31980.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G48850.2 (Arabidopsis thaliana), 5'ss of exon 11
GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtct-taatctcttctctttctgtcttcatcactatctcattcactcagcacacacagatactagccactcagatatgtcaagaggggtttttgtat
|| || || || ||||| ||||| || || |||||| |||| |||||||||||||||||||||||||||||| | | ||    ||        |||| || |  ||  ||            | |    |  |     ||     |||   ||||            
GGAGGGATCTCAAATGGTGAAATAATAAACATGAGAGTAGCCTTCAAGCCAACATCAACAATTGGAgtaagtttgtgataaactcatgcaggatctttataaacataacaaatgtcagcttgagatcattgatgttttctttccaatgcgcagag------------

upper sequence: GLYMA20G31980.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G48850.3 (Arabidopsis thaliana), 5'ss of exon 11
GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtct-taatctcttctctttctgtcttcatcactatctcat---tcactcagcacacacagatactagccactcagatatgtcaagaggggtttttgtat
|| || || || ||||| ||||| || || |||||| |||| |||||||||||||||||||||||||||||| | | ||    ||        |||| || |  ||  ||    |||    |    ||  |||  |   |  ||  ||  |   ||   |          
GGAGGGATCTCAAATGGTGAAATAATAAACATGAGAGTAGCCTTCAAGCCAACATCAACAATTGGAGTAAgtttgtgataaactcatgcaggatctttataaacataacaaatgtcagcttgagatcattgatgttt-tctttccaatgcgcagaggaag----------

upper sequence: GLYMA20G31980.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G48850.1 (Arabidopsis thaliana), 5'ss of exon 11
GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtct-taatctcttctctttctgtcttcatcactatctcattcactcagcacacacagatactagccactcagatatgtcaagaggggtttttgtat
|| || || || ||||| ||||| || || |||||| |||| |||||||||||||||||||||||||||||| | | ||    ||        |||| || |  ||  ||            | |    |  |     ||     |||   ||              
GGAGGGATCTCAAATGGTGAAATAATAAACATGAGAGTAGCCTTCAAGCCAACATCAACAATTGGAgtaagtttgtgataaactcatgcaggatctttataaacataacaaatgtcagcttgagatcattgatgttttctttccaatgcgcag--------------

upper sequence: GLYMA20G31980.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv13s0019g04190.t01 (Vitis vinifera), 5'ss of exon 11
GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtcttaatctcttctctttctgtcttcatcactatctcattcactca-gcacacacagatactagccactcagatatgtcaagaggggtttttgtat-
|| ||||| || || ||||||||||| || || ||||||| ||||||||||||||| ||||||||||||||    |      ||||| ||| |||    ||| |    |   || || |||  ||     |  | |  |     |  ||    | ||   |  |    
GGCGGAATATCAAACGGGGAAATCATAAACATAAGAATAGGTTTCAAGCCAACATCTACAATTGGAgtaagc--aagctctctctctctctctctcatgcacaagacaacaaacacatgcattcatgagaataatcagcatcctttggttgtaatggagctcagccaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58017502|gb|CX704244.1|CX704244
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAAGACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctta ... acttgtgcagAAGAAGCAAAAGACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|19052637|gb|BM731304.1|BM731304
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAAGACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctta ... acttgtgcagAAGAAGCAAAAGACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|120533980|gb|EH262113.1|EH262113
EST:     GGTGGTGGTAGATCTTCTGCAAGAGAAACAATTGGAAGGGTTGCTTCTGGTGCTGTTGCTAAGAAAATCCTTAAAGAATTTTCTGGAACTGAG
genomic: GGTGGTGGTAGATCTTCTGCAAGAGAAACAATTGGAAGGGTTGCTTCTGGTGCTGTTGCTAAGAAAATCCTTAAAGAATTTTCTGGAACTGAG
EST: gi|6668053|gb|AW279504.1|AW279504
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAAGACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctta ... acttgtgcagAAGAAGCAAAAGACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|254340229|gb|GR858354.1|GR858354
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAAGACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctta ... acttgtgcagAAGAAGCAAAAGACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC