1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...aaagcttgctttgttcgatgtctgagactgagtgtttcactatgttgaaattgtcacattcaattaatttttcatttcttttacatattgattaactcagGTCAGCAAAGGCGTTGAATCAACATTGGTCCAGCTTCTTGAAACAGGCTTATTACATGCTGATCCACATCCTGGTAACTTGCGTTACACTTCCTCAGGAC
species | Glycine max |
transcript | GLYMA20G31940.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAAAGGCAGAAATTAGATGCAAAAAGGCGTCTACTTGATCTG GTCAGCAAAGGCGTTGAATCAACATTGGTCCAGCTTCTTGAAACAGGCTTAEST: gi|192326450|gb|FK015937.1|FK015937
genomic: GAAAGGCAGAAATTAGATGCAAAAAGGCGTCTACTTGATCTGgtatgtaaac ... attaactcagGTCAGCAAAGGCGTTGAATCAACATTGGTCCAGCTTCTTGAAACAGGCTTA
EST: CAGAAAGGCAGAAATTAGATGCAAAAAGGCGTCTACTTGATCTG GTCAGCAAAGGCGTTGAATCAACATTGGTCCAGCTTCTTGAAACAGGCTTA
genomic: CAGAAAGGCAGAAATTAGATGCAAAAAGGCGTCTACTTGATCTGgtatgtaaac ... attaactcagGTCAGCAAAGGCGTTGAATCAACATTGGTCCAGCTTCTTGAAACAGGCTTA
tgaaattgtcacattcaattaatttttcatttcttttacatattgattaactcagGTCAGCAAAGGCGTTGAATCAACATTGGTCCAGCTTCTTGAAACAGGCTTATTACATGCTGATCCACATCCTGGTAACTTGCGTTACACTTCCTCAGGAC
gattaac putative branch site (score: 2)
attcaattaatttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagcttgctttgttcgatgtctgagactgagtgtttcactatgttgaaattgtcacattcaattaatttttcatttcttttacatattgattaactcagGTCAGCAAAGGCGTTGAATCAACATTGGTCCAGCTTCTTGAAACAGGCTTATTACATGCTGATCCACATCCTGGTAACTTGCGTTACACTTCCTCAGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- -gcttgct
- - - - - - - - -atgtctg
- - - - - - - - - - - - - - tgagtgt
- - - - - - - - - - - - - - - - - - - - - tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -acattca