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...gtgggcagggaaaacggaatatacttgtgcttgaagattttctttggttggccaaaatatttatataatgtatgaaacttacttatcattgaatgaacagGATGGAGCTTCATTAATCAAAGCAATGGTCTCGAAGGAGGGAAAGTTTTTCCGCCAACAACTCTGCAAGATCATAGTTGACTTACTGTACCAATGGATGA
species | Glycine max |
transcript | GLYMA20G31940.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AGATGGTGTTGCTATCAGAAGACTTCTCATGACTGCT GATGGAGCTTCATTAATCACAGCAATGGTCTCGAAGGAGGGAAAGTTTTTCEST: gi|17964496|gb|BM271230.1|BM271230
genomic: AGATGGTGTTGCTATCAGAAGACTTCTCATGACTGCTgtgagttcct ... gaatgaacagGATGGAGCTTCATTAATCAAAGCAATGGTCTCGAAGGAGGGAAAGTTTTTC
EST: TTTTACCATCCAAAGATGGTGTTGCTATCAGAAGACTTCTCATGACTGCT GATGGAGCTTCATTAATCAAAGCAATGGTCTCGEST: gi|192326450|gb|FK015937.1|FK015937
genomic: TTTTACCATCCAAAGATGGTGTTGCTATCAGAAGACTTCTCATGACTGCTgtgagttcct ... gaatgaacagGATGGAGCTTCATTAATCAAAGCAATGGTCTCG
EST: TTTTACCATCCAAAGATGGTGTTGCTATCAGA-GACTTCTCATGACTGCT GATGGAGCTTC
genomic: TTTTACCATCCAAAGATGGTGTTGCTATCAGAAGACTTCTCATGACTGCTgtgagttcct ... gaatgaacagGATGGAGCTTC
ggttggccaaaatatttatataatgtatgaaacttacttatcattgaatgaacagGATGGAGCTTCATTAATCAAAGCAATGGTCTCGAAGGAGGGAAAGTTTTTCCGCCAACAACTCTGCAAGATCATAGTTGACTTACTGTACCAATGGATGA
aacttac putative branch site (score: 2)
aaaatatttatataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggcagggaaaacggaatatacttgtgcttgaagattttctttggttggccaaaatatttatataatgtatgaaacttacttatcattgaatgaacagGATGGAGCTTCATTAATCAAAGCAATGGTCTCGAAGGAGGGAAAGTTTTTCCGCCAACAACTCTGCAAGATCATAGTTGACTTACTGTACCAATGGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- -ggcaggg
- - - - - - - - - - - -cttgtgc
- - - - - - - - - - - - - - - - - - - - - - tggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - -ccaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatga