Sequence
atgc intronic sequence ATGC exonic sequenceTTGGTCAGTCCCTTTCCACAAGGCCAGATATCATTGGTGTTGAGATGTCCAAGgttagattgaaaactgtctttattgccatttatttactgtcaagcatttctttcccatgatgaatttgggaagatggggcaaattattggttattggcag...
Basic information
species | Glycine max |
transcript | GLYMA20G31940.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G31940.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G39190.2 (Arabidopsis thaliana), 5'ss of exon 4
TTGGTCAGTCCCTTTCCACAAGGCCAGATATCATTGGTGTTGAGATGTCCAAGgttagattgaaa--actgtctttattgcc---atttatttactgtcaagcatttctttcccatg---------atgaatttgggaagatggggcaaatta---ttggttattggcag--------------------------------------------
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TTGGTCAATCGCTTTCCACGAGGCCAGATATCATTGGGACTGAAATCTCCAAGgtcagatagaagttatggtcacatttgtctaaatctcttagcttttaatagtgtctttctggtgcatgtttccattgttctttctctattctgcatgctacatttggttgttcttagggatgtagctgtctgactatgtttgttatgatttgaaactgcag
upper sequence: GLYMA20G31940.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0019g04130.t01 (Vitis vinifera), 5'ss of exon 4
TTGGTCAGTCCCTTTCCACAAGGCCAGATATCATTGGTGTTGAGATGTCCAAGgttagattgaaaactgtctttattgccatttatttactgtcaagcatttctttcccatgatgaatttgggaagatggggcaaattattggttattggcag
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TTGGTCAGTCCATTTCCACAAGACCAGATATCATTGGTCCAGAAATTTCCAAGgttagatggtggatatttttctattctattttgcattaatgcatttactgtctgctatgttaaaatttcttccttctaagcaggtacaactctgcaactaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26268090|gb|CA819153.1|CA819153EST: GTCAGTCCCTTTCCACAAGGCCAGATATCATTGGTGTTGAGATGTCCAAG GCATTGTCAGAATTGCATGATCAAATCCCTCCTTTTCCCAGGACTGTTGCT
genomic: GTCAGTCCCTTTCCACAAGGCCAGATATCATTGGTGTTGAGATGTCCAAGgttagattga ... cttcttgcagGCATTGTCAGAATTGCATGATCAAATCCCTCCTTTTCCCAGGACTGTTGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGGTCAGTCCCTTTCCACAAGGCCAGATATCATTGGTGTTGAGATGTCCAAGgttagattgaaaactgtctttattgccatttatttactgtcaagcatttctttcccatgatgaatttgggaagatggggcaaattattggttattggcag
- - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttccc