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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAAGAGTGACCCTCGCCTGTATGCTGATGAACTAGGGAAAGGTTTTGTTGGTGAATTGGATTACACTTTAGAGGCTGCAAATGCTTCAAAGTTTCTGgtaataaataattgacatatcaattggagctttattatgtttacactttacatattgatgaattctagaactgcacaatttagagctttgatgaaatctt...

Basic information

species Glycine max
transcript GLYMA20G31940.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31940.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0019g04130.t01 (Vitis vinifera), 5'ss of exon 7
GAGAAAGAGTGACCCTCGCCTGTATGCTGATGAACTAGGGAAAGGTTTTGTTGGTGAATTGGATTACACTTTAGAGGCTGCAAATGCTTCAAAGTTTCTGgtaataaataattgacatatcaattggagctttattatgtttacactttacatattgatgaattctagaactgcacaatttagagctttgatgaaatctt--------
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GAGAAAAAGTGATCCTCGTCTTTATGCCGATGAACTTGGGAAGGGCTTGTCTGGAGAGTTGGATTACACTTTAGAGGCTGCAAATGCCTCTGAGTTCCTGgtacttgttatgt----tttccatttgagttccattgcctttttaatgt-caagtggataa---ctgaaaaggcctcatgaagagctactagaaacttttcctgaggg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26268090|gb|CA819153.1|CA819153
EST:     TTGGTGAATTGGATTACACTTTAGAGGCTGCAAATGCTTCAAAGTTTCTG                         GAAGTTCACTCT
genomic: TTGGTGAATTGGATTACACTTTAGAGGCTGCAAATGCTTCAAAGTTTCTGgtaataaata ... ctaagtgcagGAAGTTCACTCT