1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtagttgtttagattttggtcactcctggtagactgtttcattgattttttttttcttgttttcttttcctcttccttgtgtttggcttccaaactcagCCATGGATGTCTCGAGCATATGATCCATGCACTGAAAGGTATTCTGATTTGTATTTCAACCGTCCAGAAGTTCAGAAGGCACTTCATGCCAATGTTACTG
species | Glycine max |
transcript | GLYMA20G31890.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGACGTGG-TTGAAAGGGGCGCTAT CCATGGATGTCTCGAGCATATGATCCATGCACTGAAAGGTATTCTGATTTGEST: gi|58022161|gb|CX708902.1|CX708902
genomic: CAGACGTGGTTTG-AAGGGGCGCTATgtaagctttt ... ccaaactcagCCATGGATGTCTCGAGCATATGATCCATGCACTGAAAGGTATTCTGATTTG
EST: AGCCTTGTACCAATACAGCATCACTCAGACGTGG-TTGAAGGGGCGCTAT CCATGGATGTCTCGAGCATATGATCCATGCACTGAAAGGTATTCTGATTTGEST: gi|8827497|gb|BE211227.1|BE211227
genomic: AGCCTTGTAACAATACAGCATCACTCAGACGTGGTTTGAAGGGGCGCTATgtaagctttt ... ccaaactcagCCATGGATGTCTCGAGCATATGATCCATGCACTGAAAGGTATTCTGATTTG
EST: AGCCTTGTAACAATACAGCATCACTCAGACGTGGTTTGAAGGGGCGCTAT CCATGGATGTCTCGAGCATATGATCCATGCACTGAAAGGTATTCTGATTTGEST: gi|17021542|gb|BM092576.1|BM092576
genomic: AGCCTTGTAACAATACAGCATCACTCAGACGTGGTTTGAAGGGGCGCTATgtaagctttt ... ccaaactcagCCATGGATGTCTCGAGCATATGATCCATGCACTGAAAGGTATTCTGATTTG
EST: AGCCTTGTAACAATACAGCATCACTCAGACGTGGTTTGAAGGGGCGCTAT CCATGGATGTCTCGAGCATATGATCCATGCEST: gi|5753586|gb|AI960873.1|AI960873
genomic: AGCCTTGTAACAATACAGCATCACTCAGACGTGGTTTGAAGGGGCGCTATgtaagctttt ... ccaaactcagCCATGGATGTCTCGAGCATATGATCCATGC
EST: AGCCTTGTAACAATACAGCATCACTCAGACGTGGTTTGAAGGGGCGCTAT CCATGGATGTCTCGAGCATATGATCCATGCACTGAAAGGTATTCTGATTTG
genomic: AGCCTTGTAACAATACAGCATCACTCAGACGTGGTTTGAAGGGGCGCTATgtaagctttt ... ccaaactcagCCATGGATGTCTCGAGCATATGATCCATGCACTGAAAGGTATTCTGATTTG
attttttttttcttgttttcttttcctcttccttgtgtttggcttccaaactcagCCATGGATGTCTCGAGCATATGATCCATGCACTGAAAGGTATTCTGATTTGTATTTCAACCGTCCAGAAGTTCAGAAGGCACTTCATGCCAATGTTACTG
cattgat putative branch site (score: 4)
ttttcttgttttcttt putative PPT
ttttttcttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtagttgtttagattttggtcactcctggtagactgtttcattgattttttttttcttgttttcttttcctcttccttgtgtttggcttccaaactcagCCATGGATGTCTCGAGCATATGATCCATGCACTGAAAGGTATTCTGATTTGTATTTCAACCGTCCAGAAGTTCAGAAGGCACTTCATGCCAATGTTACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - -cactcct
- - - - - - - - - - - - - - - - - ctgtttc