1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgattctatgttttgatgtgttagttttcttactaaggattttggtactgtaattgtcaattgaatttcttagaaatacttttcagGTCACTATGTTCCTCAGTTGGCTCAAATTGTTTACGAGAAAAATAAGGGGATCAAGAACCCAGTTATAAATTTTAAGGGATTTATG
species | Glycine max |
transcript | GLYMA20G31890.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTTCAATATAAGCATAGAGAATTCTACATTGCTGNAGAAAGTTATGCAG GTCACTATGTTCCTCAGTTGGCTCAAATTGTTTACGAGAAAAATAAGGGGAEST: gi|17021542|gb|BM092576.1|BM092576
genomic: TCCTCAATATAAGCATAGAGAATTCTACATTGCTGGAGAAAGTTATGCAGgtgattctat ... tacttttcagGTCACTATGTTCCTCAGTTGGCTCAAATTGTTTACGAGAAAAATAAGGGGA
EST: TCCTCAATATAAGCATAGAGAATTCTACATTGCTGGAGAAAGTTATGCAG GTCACTATGTTCCTCAGTTGGCTCAAATTGTTTACGAGAAAAATAAGGGGA
genomic: TCCTCAATATAAGCATAGAGAATTCTACATTGCTGGAGAAAGTTATGCAGgtgattctat ... tacttttcagGTCACTATGTTCCTCAGTTGGCTCAAATTGTTTACGAGAAAAATAAGGGGA
actaaggattttggtactgtaattgtcaattgaatttcttagaaatacttttcagGTCACTATGTTCCTCAGTTGGCTCAAATTGTTTACGAGAAAAATAAGGGGATCAAGAACCCAGTTATAAATTTTAAGGGATTTATG
ttcttac putative branch site (score: 2)
tacttttc putative PPT
aatttcttagaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattctatgttttgatgtgttagttttcttactaaggattttggtactgtaattgtcaattgaatttcttagaaatacttttcagGTCACTATGTTCCTCAGTTGGCTCAAATTGTTTACGAGAAAAATAAGGGGATCAAGAACCCAGTTATAAATTTTAAGGGATTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC